PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539049.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 869aa    MW: 97263.2 Da    PI: 4.8011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539049.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08717758144
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                        r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  KN539049.1_FGP009 717 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 758
                        569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-10708764IPR009057Homeodomain-like
PfamPF159633.7E-25710791No hitNo description
SMARTSM007177.5E-9716764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-5717759IPR009057Homeodomain-like
CDDcd001671.39E-6719759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MIDDEADFGN ITDATEGQAA AKFRPKARAK PPSLGCHGSE TDGNACASGG ILDTPSEDVV  60
TVSLGLVNNP DVALDSSTVF ASSAHKVSQN EENNDDVSHV ATHKENMVVS DTQAPPTCCS  120
ARTIDDLADF EGLCDDTHVE EERVAKFQPK FRVKTSKAAS KSQRTNQKAG VSTVDVLSQN  180
KEDGKDQAGC NDKQLHSPTR HQESVQISYS QAHLGTHNST IDDVANSDSI MEEPAQEEMA  240
AKFQPRLRPK AGGASPGVAE TIDAACVATP EFGVSSVDVV SQDTEEDSHR EGLSDDSCQK  300
YIDEEAITTS GTGPPQDLDD TVDLDSHAEM VNPHPDGSPL IIEELSAGTT VKFQPYVRRK  360
KGKGKSVSFV PPNVSHAHAP TDTNFETSNS SHFCKDIATG ESLSNLPQQA SEKICISGEH  420
HPDDQECNDP ENQYHEGEPY DHVIEQEPER DARETGTSMK LRNRRKLQKD GIPEHTADDI  480
MDEDFGEPPS DEQDNDSGDE YTARGKQKGR RKSREKNINK EPSRGTKRTS GDSTIEESQK  540
QKLQKNKSKA SSGGQKKTSK DSSVEQPEKK LTHRIRRKRM EEVKTLLETP DHEIDRMKLS  600
VTHLRLLQEA KERIKASFVV PHLLVLFIEH FCAVDIQFAF CFYRAKKFHQ DHRPLIIGKT  660
TWGLFGSNGN VQGTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW  720
SKSETDKFYE GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSRDN  780
LYFKEVIKKL NIEDVQPDIN NTHEQEGTSN EEDPGNKNIP GGLINEEEEN GLDWSDKELD  840
MHRSEVEEKE HVSTNDDDDD DLGDVFDWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539049.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLC7J0290.0C7J029_ORYSJ; Os03g0840400 protein
STRINGORUFI03G42160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.15e-32MYB_related family protein