PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539014.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 331aa    MW: 36351.4 Da    PI: 7.0552
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539014.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55221491129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee+v++yL++k+ +++++   vi +vd++k+ePw+Lp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+
  KN539014.1_FGP010  22 LPPGFRFHPTDEEIVSHYLTPKALNHRFSS-GVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEI 112
                        79*************************999.99***************988999************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++ +g lvg+kktLvfy grap+gekt Wvmhe+rle
  KN539014.1_FGP010 113 FRGRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 149
                        **********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6413172IPR003441NAC domain
PROSITE profilePS5100558.4522172IPR003441NAC domain
PfamPF023654.5E-2923148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSEVSVMAEV EETAAAAPPL DLPPGFRFHP TDEEIVSHYL TPKALNHRFS SGVIGDVDLN  60
KCEPWHLPAM AKMGEKEWYF FCHKDRKYPT GTRTNRATES GYWKATGKDK EIFRGRGILV  120
GMKKTLVFYL GRAPRGEKTG WVMHEFRLEG KLPSQLPRSA KDQWAVCKVF NKELALAAKN  180
GPMALPPLMD PSFIADIDGV DDAKVSASTS GQAAVAAGFH VASQGMSYQQ VKMEKPLPLP  240
YLHQQPPRML HSGQYFSLPA VHPGDLTPSA IRRYCKAEQV SGQTSALSAS RDTGLSTDPN  300
AAGCAEISSA PTSQPFPEFD DPILGLDDFW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-532017318169NAC domain-containing protein 19
3swm_B3e-532017318169NAC domain-containing protein 19
3swm_C3e-532017318169NAC domain-containing protein 19
3swm_D3e-532017318169NAC domain-containing protein 19
3swp_A3e-532017318169NAC domain-containing protein 19
3swp_B3e-532017318169NAC domain-containing protein 19
3swp_C3e-532017318169NAC domain-containing protein 19
3swp_D3e-532017318169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539014.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0659890.0AK065989.1 Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence.
GenBankJN1854450.0JN185445.1 Oryza sativa Japonica Group NAC transcription factor 39 (NAC39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633121.10.0NAC domain-containing protein 92
TrEMBLA0A0E0CZW80.0A0A0E0CZW8_9ORYZ; Uncharacterized protein
STRINGOMERI03G14410.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.27e-84Arabidopsis NAC domain containing protein 87