PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539003.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 505aa    MW: 56484.3 Da    PI: 5.4251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539003.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-1582169197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk++    +++++ + +p +fa+++   +  +  + led  g +W+v+l    ++g   ++ GWk+Fv ++++ +g+f+vF+ + rs f  
  KN539003.1_FGP004  82 FFKIM--VGYFSEN-MDIPLPFARTITDLT--GSNVYLEDAYGLRWRVRL--YLHDGVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF-- 164
                        66666..5566666.9**********5443..337***************..999999*************************9998999.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v++f
  KN539003.1_FGP004 165 TVQIF 169
                        88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2278174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1979172IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90179172IPR003340B3 DNA binding domain
CDDcd100174.39E-1880169No hitNo description
PfamPF023624.1E-1282169IPR003340B3 DNA binding domain
SMARTSM010192.0E-1382172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVELIKVPKM EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI  60
RLHGMASSSS EKARPIPTLP SFFKIMVGYF SENMDIPLPF ARTITDLTGS NVYLEDAYGL  120
RWRVRLYLHD GVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC  180
ERNKRQSRKR KPGRKTGYPA DNQMVKVSSK DVVKRRKKLR TGEQRYDLDP RQHDMPVHVC  240
IDSGSELRCS ESSVKELDAA ADKSHAVVQV PATECNADPS YNAAGMKTIE NLEAIGASSN  300
TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRA MQLYCELGLE DGNAETENCE  360
NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR  420
TPGDCFGMPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IGQGNTYPDI  480
DAAPDDSKKD KNVLHSECNK VAQKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13749RRRKRVSDPQRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539003.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635300.0AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645658.10.0B3 domain-containing protein Os01g0905400
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A0D9YIU60.0A0A0D9YIU6_9ORYZ; Uncharacterized protein
STRINGOGLUM01G45160.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]