PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539001.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 544aa    MW: 60247.5 Da    PI: 6.8598
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539001.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.63.1e-46351862128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................kvkaeekew.yfFskrdkkyatgkrkn 75 
                         pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk                 + +a eke+ yfF+ r +ky+++ r+n
  KN539001.1_FGP003  35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavategsssssssSSTAAEKECgYFFCLRGRKYRNSIRPN 125
                        69***************************.99***************7689999999998877653334666778***************** PP

                NAM  76 ratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        r+t sg+Wkatg dk+++s+         g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  KN539001.1_FGP003 126 RVTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 186
                        *******************8777666655555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-4834211IPR003441NAC domain
PROSITE profilePS5100548.36834211IPR003441NAC domain
PfamPF023651.2E-2236186IPR003441NAC domain
SuperFamilySSF524902.49E-44336458IPR003008Tubulin/FtsZ, GTPase domain
PRINTSPR011612.1E-40336356IPR000217Tubulin
Gene3DG3DSA:3.40.50.14407.5E-58337458IPR003008Tubulin/FtsZ, GTPase domain
PfamPF000912.3E-29338458IPR003008Tubulin/FtsZ, GTPase domain
PRINTSPR011632.1E-25367384IPR002453Beta tubulin
SMARTSM008647.4E-4373494IPR003008Tubulin/FtsZ, GTPase domain
PRINTSPR011612.1E-40377396IPR000217Tubulin
PRINTSPR011632.1E-25414425IPR002453Beta tubulin
PRINTSPR011612.1E-40419430IPR000217Tubulin
PRINTSPR011612.1E-40432456IPR000217Tubulin
PRINTSPR011632.1E-25434452IPR002453Beta tubulin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007017Biological Processmicrotubule-based process
GO:0005874Cellular Componentmicrotubule
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDEEKRLERI IKEIDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP  60
FSIDIIKEID IYKHDPWDLP KVSHGAVATE GSSSSSSSSS TAAEKECGYF FCLRGRKYRN  120
SIRPNRVTGS GFWKATGIDK PIYSSSLAAA AAGAGDCIGL KKSLVYYRGS AGKGTKTDWM  180
MHEFRLPSSI SDSDHLQDAS ETWTICRIFK RSMTYTKGRA AAAAASMNKR ISHELQHIHH  240
HHQQQFYYHE VVHDGHGHHH RRHLQHYAGS ASMAAAAANI VDVIDHSSDA ETTTRSHSHS  300
QSHLVADIRH RQSPFMLDFH AGTAVSSSST AAAGWSECGN QIGAKFWEVI CDEHGVDATG  360
RYAGDSDLQL ERINVYYNEA SGGRYVPRAV LMDLEPGTMD SVRSGPFGQI FRPDNFVFGQ  420
SGAGNNWAKG HYTEGAELID SVLDVVRKEA ENCDCFQGDM EFKQNKFLPP EKQIVTANPD  480
IDIMNVETLR KMTGDVLTGG KDRMCSFFFM VTPTSTVQVL IYEKKDKCTR AFGCFSGCLP  540
ATYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ubq_B5e-7533745811132Tubulin beta chain
5ubq_D5e-7533745811132Tubulin beta chain
5ubq_F5e-7533745811132Tubulin beta chain
5ucy_B5e-7533745811132Tubulin beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539001.1_FGP003
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139050.0AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619497.11e-179NAC domain-containing protein 41 isoform X2
TrEMBLA0A0E0RKD01e-177A0A0E0RKD0_ORYRU; Uncharacterized protein
TrEMBLQ2QLR91e-177Q2QLR9_ORYSJ; No apical meristem protein
STRINGORUFI12G21970.11e-178(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-73NAC domain containing protein 42