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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN538998.1_FGP008 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 180aa MW: 19904.6 Da PI: 8.7518 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN538998.1_FGP008 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 78.3 | 5.3e-25 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
KN538998.1_FGP008 19 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 66
8*******************************************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MVRSRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA 60 GNVFAFGQPT VDAVLRRFDP LHADPAPAAV EDGGGDVVVA DPEELDALRR AEEQTKAQVA 120 AEQARMRDVG DKVTQAMAGR PLWWEADVEA LGEAELPEFV RALERLRDSV CYYRMLLKPH
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-15 | 10 | 88 | 1 | 78 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003951 | 0.0 | AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01. |
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |