PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 456aa MW: 48682.1 Da PI: 6.9506

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538995.1_FGP023	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.5	1.4e-33	220	276	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh KN538995.1_FGP023 220 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGTHNHA 276 8**************************************.*************7 PP
2	WRKY	106.2	1.7e-33	384	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+ KN538995.1_FGP023 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 442 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-29	211	278	IPR003657	WRKY domain
PROSITE profile	PS50811	23.479	214	278	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-25	215	278	IPR003657	WRKY domain
SMART	SM00774	2.5E-36	219	277	IPR003657	WRKY domain
Pfam	PF03106	1.5E-25	220	275	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.0E-37	369	443	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-29	376	444	IPR003657	WRKY domain
PROSITE profile	PS50811	38.136	379	444	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	384	443	IPR003657	WRKY domain
Pfam	PF03106	7.1E-26	385	442	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009753	Biological Process	response to jasmonic acid
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0010200	Biological Process	response to chitin
GO:0010508	Biological Process	positive regulation of autophagy
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0070370	Biological Process	cellular heat acclimation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MTTSSSGSVE TSANSRPGTF SFASASFTDL LGGNAGAGGG GVSRYKAMTP PSLPLSPPPV 60 SPSSFFNSPI GMNQADFLGS PVLLTSSIFP SPTTGAFASQ HFDWRPEMAA AQSADQGGKD 120 EQRNSYSDFS FQTAPASEEA ARTTTFQPPV PPAPLGDEAY RSQQQQQPWG YQQQPAGMDA 180 GANTASFGAA PFQATSSEMA PQVQGGGGYS QQQSQRRSSD DGYNWRKYGQ KQVKGSENPR 240 SYYKCTFPNC PTKKKVERSL DGQITEIVYK GTHNHAKPQN TRRNSGSSAA QVLQSGGDMS 300 EHSFGGMSGT AATPENSSAS FGDDEIGVGS PRAGNGGGDE FDDDEPDSKR WRKDGDGEGI 360 SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTAGCPVRKH 420 VERASHDLRA VITTYEGKHN HDGPGMQMAA EKGTVP

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MTTSSSGSVE TSANSRPGTF SFASASFTDL LGGNAGAGGG GVSRYKAMTP PSLPLSPPPV  60
SPSSFFNSPI GMNQADFLGS PVLLTSSIFP SPTTGAFASQ HFDWRPEMAA AQSADQGGKD  120
EQRNSYSDFS FQTAPASEEA ARTTTFQPPV PPAPLGDEAY RSQQQQQPWG YQQQPAGMDA  180
GANTASFGAA PFQATSSEMA PQVQGGGGYS QQQSQRRSSD DGYNWRKYGQ KQVKGSENPR  240
SYYKCTFPNC PTKKKVERSL DGQITEIVYK GTHNHAKPQN TRRNSGSSAA QVLQSGGDMS  300
EHSFGGMSGT AATPENSSAS FGDDEIGVGS PRAGNGGGDE FDDDEPDSKR WRKDGDGEGI  360
SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTAGCPVRKH  420
VERASHDLRA VITTYEGKHN HDGPGMQMAA EKGTVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-35	211	444	8	77	Probable WRKY transcription factor 4
2lex_A	3e-35	211	444	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00299	DAP	Transfer from AT2G38470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538995.1_FGP023

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY676925	0.0	AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619871.1	0.0	WRKY transcription factor WRKY24
Swissprot	Q6B6R4	0.0	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A0E0FV71	0.0	A0A0E0FV71_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0N4D9	0.0	A0A0E0N4D9_ORYRU; Uncharacterized protein
TrEMBL	I1NSW6	0.0	I1NSW6_ORYGL; Uncharacterized protein
STRING	ORUFI01G39110.1	0.0	(Oryza rufipogon)
STRING	ONIVA01G40720.1	0.0	(Oryza nivara)
STRING	ORGLA01G0295600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2992	36	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-92	WRKY DNA-binding protein 33

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]