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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN538988.1_FGP001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 223aa MW: 24454 Da PI: 9.4455 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN538988.1_FGP001 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39.9 | 7.5e-13 | 88 | 135 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq
KN538988.1_FGP001 88 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 135
67999***********************.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEVDAAAAA AMVQQQQQQY 60 AAAAGEHRPR KAAKAPAAAA SRPASQNQEH ILAERKRREK LSQRFIALSK IVPGLKKMDK 120 ASVLGDAIKY VKQLQDQVKG LEEEARRRPV EAAGLIHCEN RKGALITALS EVETIGLTIM 180 NTNVLPFTSS SLDITIMATA GENFSLSVKD IVKKLSQAFK LSL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 93 | 98 | ERKRRE |
2 | 94 | 99 | RKRREK |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK120539 | 1e-127 | AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence. |