PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538988.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 24454 Da PI: 9.4455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 88 | 135 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq KN538988.1_FGP001 88 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 135 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-18 | 87 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 88 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 88 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.29E-13 | 90 | 139 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEVDAAAAA AMVQQQQQQY 60 AAAAGEHRPR KAAKAPAAAA SRPASQNQEH ILAERKRREK LSQRFIALSK IVPGLKKMDK 120 ASVLGDAIKY VKQLQDQVKG LEEEARRRPV EAAGLIHCEN RKGALITALS EVETIGLTIM 180 NTNVLPFTSS SLDITIMATA GENFSLSVKD IVKKLSQAFK LSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 90 | 144 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 98 | ERKRRE |
2 | 94 | 99 | RKRREK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00273 | DAP | Transfer from AT2G22750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538988.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120539 | 1e-127 | AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690046.1 | 1e-117 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q1PF17 | 1e-34 | BH018_ARATH; Transcription factor bHLH18 | ||||
TrEMBL | A0A446R7L7 | 1e-109 | A0A446R7L7_TRITD; Uncharacterized protein | ||||
STRING | OPUNC03G29750.3 | 3e-87 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 2e-29 | bHLH family protein |
Publications ? help Back to Top | |||
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