PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538986.1_FGP027
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 473aa    MW: 52319.5 Da    PI: 9.6378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538986.1_FGP027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-0884122141
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                        r +WT  E++++++a +++  + Wk+I +++g  +t  q++
  KN538986.1_FGP027  84 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQLV 122
                        789*****************77.*********.99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-1072128IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-982120IPR006447Myb domain, plants
PROSITE profilePS5129310.65782133IPR017884SANT domain
SMARTSM007177.3E-783131IPR001005SANT/Myb domain
PfamPF002497.5E-684120IPR001005SANT/Myb domain
CDDcd001678.43E-586129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGGKSEVNQE RMDVETLGAR QPPDKASSRA EHPNPNPSLR LRLSEIAGMS SAPQQLLDSS  60
SPGPEVEDDG GRRVRKPYTI TKSRESWTDP EHDKFLEALQ LFDRDWKKIE AYVGSKTVIQ  120
LVAFVTEYFR VLQFLNLPGG DLIINLGVLA APQVVLPQQA SHLMEQGCLI PMDISPVARN  180
FNANDVFSSW DNALAQSFSP RHTHGAANNC SSSVESQSGT CPTSEAIEQE FMLPTLRAMP  240
DFSQVYNFLG SIFDPETSGH LQRLREMDPI DVETWWIPVI TCGLDNLDIV LLLMKNLSIN  300
LSNPNFEAHH MACKKLSKIK SSRNSVVCTL SFCLEARKEK KIGRIKKKKK KKKKKKKKKK  360
KRLVAMVQGA SGGGWSSKVE EGVIVGGLLV TQCILAGYVV FVDHVLSLGA NPLSLIVLGA  420
VASSLFFLPF AVVLERKKWP SKISRTLMAQ FVFIALGGSM SIEQNTVREA RAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347361KKKKKKKKKKKKKKR
2348361KKKKKKKKKKKKKR
3350362KKKKKKKKKKKRL
4351360KKKKKKKKKK
5353361KKKKKKKKR
6355361KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538986.1_FGP027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116720.0AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence.
GenBankAK1196400.0AK119640.1 Oryza sativa Japonica Group cDNA clone:002-130-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642931.11e-141protein REVEILLE 6
TrEMBLB8B1I00.0B8B1I0_ORYSI; Uncharacterized protein
STRINGOMERI06G00320.11e-171(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-57MYB_related family protein