PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538985.1_FGP018
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 279aa    MW: 30384.8 Da    PI: 9.0547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538985.1_FGP018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.1e-0798120123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  KN538985.1_FGP018  98 HYCQVCGKGFKRDANLRMHMRAH 120
                        68*******************99 PP
2zf-C2H213.60.0002190213123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ Cg k+Fs  s+L++H + +
  KN538985.1_FGP018 190 YVCNRCGrKHFSVLSDLRTHEKHC 213
                        9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.16E-696123No hitNo description
PROSITE profilePS5015712.65398125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-798125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003498120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SMARTSM00355140152185IPR015880Zinc finger, C2H2-like
SMARTSM0035524190212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEMEEGGGFM GEQAQCHPLL YNLSVLKDRV QQLHPLVGLA VAHNAHAHGP LDVSAADAII  60
QEIVAAASSM METAAGATSA TDTIIELDAA ELLAKYTHYC QVCGKGFKRD ANLRMHMRAH  120
GDEYKSKAAL SNPTKLLAKG GDETMAAAAR KYSCPQEGCR WNRRHAKFQP LKSVICAKNH  180
YKRSHCPKMY VCNRCGRKHF SVLSDLRTHE KHCGRDRWLC SCGTSFSRKD KLIGHVSLFA  240
GHQPVMPLDA PRAGKRQRSS SASVAGNIDD TTGIGMGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538985.1_FGP018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.11e-149protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-89STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLB8B9L41e-148B8B9L4_ORYSI; Uncharacterized protein
TrEMBLI1QKG61e-148I1QKG6_ORYGL; Uncharacterized protein
TrEMBLQ6YYW01e-148Q6YYW0_ORYSJ; Os08g0562300 protein
STRINGOS08T0562300-011e-149(Oryza sativa)
STRINGORGLA08G0191700.11e-149(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.18e-92C2H2 family protein