PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538977.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 626aa MW: 69774.2 Da PI: 5.2506 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6e-13 | 552 | 598 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++llP+ +K++Ka+iL +++ Y+k L KN538977.1_FGP006 552 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 598 5899***********************7.....6***************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.7E-17 | 28 | 197 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 3.7E-19 | 210 | 369 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.177 | 549 | 598 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 552 | 615 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.46E-15 | 552 | 603 | No hit | No description |
Pfam | PF00010 | 2.2E-10 | 553 | 598 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-16 | 553 | 610 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-14 | 555 | 604 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MASAPPVQEE ALQPGTNHFR SRLAAAVKTR KISNLEDLTA DQLVLRRSEQ LRELYYSLLS 60 GECDHRARKP VAALSPEDIA DTEWYYVVCM TYAFRPGQGY FKKLYKLDQK IRHFTTGNVS 120 HESHVDKNLL YRVVVIDLLV YILPGYPAEA MQAIDLFGCA MLSLQIAKPL YYILQTIVCI 180 PFMSGVLELG TTDPVKTRKI SNLEDLTADQ LVLRRSEQLR ELYYSLLSGE CDHRARKPVA 240 ALSPEDIADT EWYYVVCMTY AFRPGQGYFK KLYKLDQKIR HFTTGNVSHE SHVDKNLLYR 300 VVVIDLLVYI LPGYPAEAMQ AIDLFGCAML SLQIAKPLYT IVCIPFMSGV LELGTTDPVS 360 EDPNLVNRIV AYLKELQFPI CLEVPSCTPS PDETEDDDTV FDGLIEEHQM VILQGEDELG 420 DVVVAGCETN GANPDTITME TDEFYSLCEE LDLDLGSYQL VIPTSARETV AAAAAAANDV 480 DGVAYSRASC FVSWKRAKNP AEKVVAVPMT AGMESSQKLL KKAVGGGTAW TSNIDGRGSV 540 AITTTTPGSS IKSHVMSERR RREKLNEMFL ILKSLLPSVR KVDKASILAE TITYLKVLEK 600 RVKELESSSR EPSRWCPTEI GQGKAP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 557 | 562 | ERRRRE |
2 | 558 | 563 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538977.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB021080 | 0.0 | AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653663.1 | 1e-136 | PREDICTED: anthocyanin regulatory R-S protein-like | ||||
Refseq | XP_015692285.1 | 1e-136 | PREDICTED: anthocyanin regulatory R-S protein-like | ||||
TrEMBL | I1PNS0 | 0.0 | I1PNS0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0183900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-36 | bHLH family protein |