PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 341aa MW: 37222.6 Da PI: 9.6104

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538974.1_FGP027	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.3e-06	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H KN538974.1_FGP027 59 FVCEVCNKGFQREQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	14	0.00015	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ KN538974.1_FGP027 135 WKCDKCNKRYAVQSDWKAHSKTC 157 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.2E-6	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.54E-8	58	81	No hit	No description
Pfam	PF12171	2.0E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	59	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0041	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	100	130	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-6	123	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.54E-8	130	155	No hit	No description
SMART	SM00355	110	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MACLGLLLVM VAKWRTLLTL LVVIFLMPHG GLGDNVGAGD PDAEVVALSP HTLLATNRFV 60 CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPKETRRRVY LCPEPSCVHH DPSRALGDLT 120 GIKKHYSRKH GEKKWKCDKC NKRYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR 180 AFCDALAQES GRIMPPMGAA LYATAGAGMA IGGLTRLAAS HQLQPFQDHS SAITTAANAA 240 AQFDHLMATS SAAAVSPAFR AAQPTSSSSS PFYLGGADDG QAHTSLLHGK PAVASSRQMM 300 DEASHAKGSE ITPNSGRTKS NLMFNFYANV ENVFNMVLSL I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	131	193	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-34	131	193	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538974.1_FGP027

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072128	0.0	AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBank	AK099830	0.0	AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650033.1	1e-162	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883278.1	1e-162	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883279.1	1e-162	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883280.1	1e-162	protein indeterminate-domain 6, chloroplastic
Refseq	XP_025883281.1	1e-162	protein indeterminate-domain 6, chloroplastic
TrEMBL	A0A0E0AYR6	1e-162	A0A0E0AYR6_9ORYZ; Uncharacterized protein
STRING	ORUFI08G25660.1	1e-162	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-104	indeterminate(ID)-domain 5