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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538970.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 153aa MW: 17225 Da PI: 6.8968 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 3.9e-15 | 29 | 132 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f kvl+p dv+ +lv+p +++ + + ++ + + +++ed g+ W +++ +k+++ + +tkGW +++++gL++gD+v F KN538970.1_FGP002 29 FGKVLMPRDVSWAtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVAGKLWLFRY--WKRDDVHCFTKGWGCYAREKGLRAGDTVSFF 118 6689999999854499********9999999965555666677777755567*******..******************************9 PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 ++ ++++++ +r KN538970.1_FGP002 119 HST-ACGRFFICCRR 132 765.55555666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-17 | 23 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 27 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-15 | 28 | 132 | No hit | No description |
Pfam | PF02362 | 2.2E-11 | 29 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0039 | 29 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.107 | 30 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPRDVSW ATEQLVIPDE HVGKLLDMVV 60 MNRPEGGFFV VVVEDGEVAG KLWLFRYWKR DDVHCFTKGW GCYAREKGLR AGDTVSFFHS 120 TACGRFFICC RRTCTSFLSL PTTSHRVNGV QIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538970.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005608 | 0.0 | AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07. | |||
GenBank | AP005696 | 0.0 | AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624416.1 | 1e-103 | putative B3 domain-containing protein Os02g0455900 | ||||
Swissprot | Q6K3B1 | 1e-104 | Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900 | ||||
TrEMBL | A0A0D9YRV4 | 1e-103 | A0A0D9YRV4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G15730.1 | 1e-103 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18138 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 8e-13 | B3 family protein |