PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538958.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 911aa    MW: 100142 Da    PI: 6.8559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538958.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-086436751955
                        HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  KN538958.1_FGP007 643 WFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 675
                        8**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.237170200IPR002885Pentatricopeptide repeat
PfamPF015350.16174201IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.449201235IPR002885Pentatricopeptide repeat
PfamPF015350.18203228IPR002885Pentatricopeptide repeat
PfamPF130417.9E-9304353IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.942304340IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.9E-5307332IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.448341375IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.684376406IPR002885Pentatricopeptide repeat
PfamPF015350.0083381404IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015381405IPR002885Pentatricopeptide repeat
PfamPF130411.8E-11409455IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553409443IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.2E-7411444IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.366444479IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974480510IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.103548582IPR002885Pentatricopeptide repeat
PfamPF000101.5E-5643675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-9643692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13643694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-6644679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MRRCPVIFFS FAVDPWLRRL IRQKPRRSRV ARNAGNKATT REHDFLSLYT TAAKDPSLQL  60
HDAKPPPPSQ GHHHHHHHHQ WTLPFAGVGQ VAATAARQQQ ERKGRVGGGG FMDSGSRSSG  120
GAGFDDDDGV AARREVSSSL KAAIADMLKS VRGRAAHAHA LRVTAHAGDI RFLVNTLIAM  180
YFACGDVQRA RLVFEGMCDR DVISWTSLIS GLVQNGSPLQ GIQQFATMMH CDVRPDFVVL  240
VTIAKAFMEL DNLPGAESAH SLVVKGGFHD EQDVMITLTA MYASFGCLVA ARALFDMVPP  300
QQVNVILWNA MISGYSKNGF ASEAVHLYKH MQLVARNLAP DSITLRSVIF ACAQLGSTEL  360
AAWMEDCVCR SEYREDVLVN TALIDMYAKS GSISHARAVF ERMHVDDRDV VVWSALITGY  420
GVQGLVNEAC TLFQDMKLAG VRPNDVTFLG LLSACNHAGA VEKGWSYFHS MKPDYGIEPQ  480
HQHYACVVDL LSRAGQLDRA YQFILNMPIK PEMTVWGALL HGCKMHGHSN MAMAECAAQH  540
IFELEQSNAG HYVQLANMYA SAGMWSQVAG MRVTMRERGV TKATGFSFIE VDGEMHSFHA  600
WDHSHPRATE IFAMLCLLSP TPAGVGGVDS EGGWEGWELQ WKWFQILREL LPHSDQKRDK  660
ATFLLEVIEY IRFLQEKVQK FEASVPEWNQ ENAKILPWSN IYFRSFWKNS QSKGQNPGDD  720
LPDPSQFIRN GSSSGYNFTG KPDDNHNMVT SAAASGAQEL VETDHAASVS YRSAETPTNI  780
TNNVTSQAQA QWASPAGVDD CAMNSEMLNN QQLAIDEGTI SLSSQYSQQL LGTLTHALES  840
SGVDLSQASI SVQINLGKRA VKRPGADGSS SSKELPSTSA NNENMGHQLT MLGGGTEELP  900
HPTKRHKSGN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-5115352416330PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538958.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
SwissprotQ9LTV81e-144PP224_ARATH; Pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A0E0ET420.0A0A0E0ET42_9ORYZ; Uncharacterized protein
STRINGOMERI09G10400.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-39BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  3. Takenaka M,Verbitskiy D,Zehrmann A,Brennicke A
    Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.
    J. Biol. Chem., 2010. 285(35): p. 27122-9
    [PMID:20566637]
  4. Ibl V, et al.
    Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana.
    J. Proteome Res., 2012. 11(1): p. 397-411
    [PMID:22010978]