PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538938.1_FGP015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 715aa MW: 75438.9 Da PI: 3.8322 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.5 | 3.6e-25 | 7 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L + +++ +e +fF+ ++ k+ +g+r++r + + gyW+ + KN538938.1_FGP015 7 LPPGLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDEAFFFADARAKNGRGSRQKRtVESGGYWQGQRMcvd 97 79****************************99***************743.456789*******************555589**97765443 PP NAM 89 .dkevlsk..kgel.vglkktLvfykgrapkgektdWvmheyrl 128 +k v+ +g + + k +L ++ ++ +kg ++ Wvmhey++ KN538938.1_FGP015 98 gEKLVV-PdgGGVEiAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 138 233333.245444426666777777.566665.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-33 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.499 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-15 | 8 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MAAADGLPPG LRFEPKDDEL VARFLLARIQ GKPLPLHGVI LDADPLCAPP WRLLADHGRG 60 DEAFFFADAR AKNGRGSRQK RTVESGGYWQ GQRMCVDGEK LVVPDGGGVE IAWRKYVLSY 120 FADGEKGSSG WVMHEYAITA PADLASSTMR LYRIRFSGHG KKRKREPESQ SAHDEHGRAR 180 CGPQIAMAET ALLLEDSAPP PQPVHPPAAV VNCVSDITDQ GSSLVFPDQP GSIYEDELQS 240 FVPEFAARNL FVSLPEGSRD VVAEAAVIED LALPPQPVPP AEVVNQADDS EGADQGCSSV 300 FAALPDLIVL PPEEDCGSGG AAPAPSWASS LDNQNDDTPA FFEFPESMDD MVGCFDFASM 360 DNQSCTSAVS EIAVLEEPFL PPPAMVNHHD GSVSNIADQS CSGVGDDSSR VNLTGSIDED 420 ELQSSVPDFT AHNLFVSLPQ GSREADAEAD SGGGVASAQF AEFGCPESMD DLSCSGVVDD 480 SSMMYPLNSP AEAGDGGGRA APASSWVSSL DNQNDEAPMF FELPDSLDDM VGCFDFAAMD 540 GQSCASAVSE TALIEELVLP PAAMVNHHDD SVSDIADHGC SGADPPPSAV VNLPNDSDGA 600 DQSCSGVVDD SLPGYYEAEP KLLLEYTACN PVDSPAKGSH DHEAGVDASG GTGSMMSSPD 660 KQREPSSSGV MDVEATGFGV PDSMDGLSCI DFAETMDDLS CIDFTIDDEL FDLWS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538938.1_FGP015 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004379 | 0.0 | AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08. | |||
GenBank | AP005257 | 0.0 | AP005257.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0417F02. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q6Z394 | 0.0 | Q6Z394_ORYSJ; Os07g0196800 protein | ||||
STRING | ONIVA07G05270.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-16 | NAC domain containing protein 47 |