PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538928.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 353aa    MW: 38895.2 Da    PI: 8.8594
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538928.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09534130
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                       +++WT eE+e l ++v ++G+g W+tI + 
  KN538928.1_FGP012  5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKD 34
                       79*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.858159IPR017930Myb domain
SuperFamilySSF466897.8E-11256IPR009057Homeodomain-like
PfamPF002498.8E-7533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10550IPR009057Homeodomain-like
CDDcd116605.72E-14650No hitNo description
SMARTSM005261.7E-12159224IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.3E-14159235IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.0E-13161235IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.925161229IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-8163221IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK WIETSRTDRS  60
CFLVEQMLED LFLDNRAVIA IQKGFSIDQL RMWMESQDKW RNLSFSASGL GSRDKLKVPR  120
IKGPSSSTSP SSQTPLLVLP PNKVAEASPS ADPEKSSQDV KIPKYSSMVI EALCEIGDPN  180
GSDVDAICHY IEQRHEVQAN FRRLLTAKLR RLIAAKKIEK IDRSYRITES YAAKVSQANK  240
SPSPKKDPAK PLKASQNLGS FAGTSPALEA AAAAAMKVAD AEAKSHLANE HMTEAERIFK  300
LAEETESLVT LATEIYERCS RGEILTIMQV AQSNFEFQSV SGNGSGTGST VLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538928.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622156.10.0single myb histone 4 isoform X1
SwissprotQ6WLH41e-101SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0E0JN190.0A0A0E0JN19_ORYPU; Uncharacterized protein
TrEMBLB8A8C40.0B8A8C4_ORYSI; Uncharacterized protein
TrEMBLI1NR470.0I1NR47_ORYGL; Uncharacterized protein
STRINGOPUNC01G28080.10.0(Oryza punctata)
STRINGORGLA01G0233700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.27e-40MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]