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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN538920.1_FGP018 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 265aa MW: 29716.3 Da PI: 7.0193 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN538920.1_FGP018 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15.8 | 2.5e-05 | 36 | 76 | 1 | 45 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45
+r ++erE+ Rd+ N+ f+eL ll ++ + + Ka +L
KN538920.1_FGP018 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLG 76
68899**********************996....34455555555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN 60 LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML 120 RTEILELQNE LRTWMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQL 180 PVIIEQHYAA TPRELQLFPE SATSEDSEPS QEHGISDHVT RPQPRYPTPT ATLPVNLFPV 240 FPGRQDQQCS SGTSGTNEED RIGRS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK070963 | 0.0 | AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] - Wu H,Ye H,Yao R,Zhang T,Xiong L
OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]
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