PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538918.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 423aa    MW: 47824.3 Da    PI: 6.7966
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538918.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.2e-2158144190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++ +  +++ ++  t+tgCkak+ vk  + +++wev+ leleHnH+l 
  KN538918.1_FGP012  58 QFYVSYGCHSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGA--TRSARKRGTKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 144
                        6****************99988..9999***************9999..77778889***************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1958145IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEEEEYNTES SNEEDMQEDD GEKQGNVAEG DVFKPVDIDP AFVPKVGMVF ESEEDAFQFY  60
VSYGCHSGFG ITRRSNNTFD GFRYRSTFIC SKGGQSRLRS GATRSARKRG TKTGCKAKMI  120
VKDAHFQNRW EVIVLELEHN HPLDPSLLKF KKQLKNSPFL QNPPLMLEAP DSSSAAVLSS  180
RGGDSGIPLS TQIEFRTKID RNRKLKLAED HIDETKKVDY KVAYDNVEDD ILCLCRLFQF  240
KEVVEFGSVN SESKGYALSI MREIRDKVIS YEKSLRDQRV DSHVSTANFA YNPVNEDFND  300
DTLPISLSTK GWDVVQGQSK RSRKKKLATP NVLDTLKKKT KRAYNKRRNA TANTLNTAVT  360
TTESITDATN VQHNQVNEGW PLTSTGAHET FPYGVETISF DLSQYNSAPS FHWPESSSRS  420
QLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538918.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647701.11e-139protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_015647702.11e-139protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A1E5WBR90.0A0A1E5WBR9_9POAL; Uncharacterized protein
STRINGORGLA07G0123700.11e-139(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-12FAR1 family protein