PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538906.1_FGP009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41830.3 Da PI: 4.6562 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.2 | 4.2e-12 | 76 | 132 | 70 | 128 |
NAM 70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+++ + k+gyWk g+ + + ++ vg+k tL y+g+ap+g++t Wvm+ey + KN538906.1_FGP009 76 NGENAIIKSKTGYWKVVGTVRIPT--STVIVGMKVTLDHYEGQAPSGKRTGWVMNEYLI 132 45555557889*******966554..5899***************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.156 | 24 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.41E-21 | 32 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-6 | 34 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MSAEIGSIFS RTIMSSKVPG LALLNTSISK SWSNEELVRF LAERKSTHSL PENVFVGMSI 60 SLIDPWNSDD PQSPKNGENA IIKSKTGYWK VVGTVRIPTS TVIVGMKVTL DHYEGQAPSG 120 KRTGWVMNEY LIEQNDEANL PQDYKNLCTI FFQGDDILNA GDKQICLDAN VPNERKEFYL 180 QYLAELEEQN AAWNNQAVCV NEQDVSSSKG LDGQKTSAAD DQSVNHAPSR EDYIELNDFL 240 NSDSSASTSE YSSQRTMISE EYFDSDAFLR EIRNDHNAAD EEHTDSKFSV AAASKSDCVV 300 ISPPEQGFVN NLDNHATIAG DSPQKSVQND KVDEHSRSMT LRHAILIRTG RLNRFMPDLL 360 IEHSQRRLQV LKQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538906.1_FGP009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072682 | 0.0 | AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614544.1 | 0.0 | protein ATAF2 isoform X1 | ||||
TrEMBL | A0A0E0IR10 | 0.0 | A0A0E0IR10_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G06600.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10916 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-14 | NAC domain containing protein 2 |