PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538898.1_FGP020
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 269aa    MW: 29421.9 Da    PI: 6.7115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538898.1_FGP020genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145678123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  KN538898.1_FGP020 56 YTCSFCRREFRSAQALGGHMNVH 78
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-65383No hitNo description
PROSITE profilePS5015711.2195683IPR007087Zinc finger, C2H2
PfamPF139121.7E-55679IPR007087Zinc finger, C2H2
SMARTSM003550.00615678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MERMAKHYWA LWGAGVRSGW PAAAHGGGAE PSWEEKAFAQ DAAGHLGGCV WPPRSYTCSF  60
CRREFRSAQA LGGHMNVHRR DRARLRQCDD DDDDPIPPTV SICAPPPPPL LPAAPDSPSL  120
LLQISSPKST TADHHQLQLQ GTNSNSPPNS CIATIIKESR NKARLFITTT MPAPATTHDL  180
GLGGGKDDDD DSNSISMEEI RRKRRRVDQP LTPTPSYSSE RERRREDDPA AADASNNKVI  240
PSSSILVNQL AMDMVGRQEI DLELRLGST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135178229superman protein
2l1o_A2e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205RKRRR
2202206KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538898.1_FGP020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361110.0CT836111.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103M23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645557.11e-141zinc finger protein 10
TrEMBLA0A0P0X1H01e-141A0A0P0X1H0_ORYSJ; Os07g0101800 protein
STRINGOS07T0101800-001e-142(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-22C2H2 family protein