PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538893.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1348aa MW: 151579 Da PI: 7.7296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538893.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.3	5e-13	278	359	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 k+Y++YA + GFs + ks++ ++g + + + Cs+ g+ + + +r++t+++C a++ +k+++d ++++ +l+HnH+ KN538893.1_FGP004 278 KYYKQYAVDSGFSAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLDHNHP 359 69***********9999998.7888***********99998.....999************99999*********7 PP
2	FAR1	53.6	7.6e-17	854	937	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C ak++vk++ d+ +v+ l+HnH+++ KN538893.1_FGP004 854 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 937 5***************9999.6677************9988.....99*******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-10	278	359	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.446	512	549	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-7	521	545	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-4	524	551	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	4.4E-15	854	938	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.5E-6	1074	1106	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.594	1074	1110	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-5	1085	1112	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1348 aa Download sequence Send to blast
MAAEGGSASA GQKVPLIDAS MAPKMEEACP TTPEEPRHLS PADERLAAKE SDGELNKSHA 60 EVCREADKNS AAYLLAKRAK LQALIKEEWA KMDFSRVHVG DWDEEAGCYK YVQLKSCITE 120 SPYKPLSCLC FHESKFGGLS PNRSSGRRDT LIGPVCCGNL WSSGRCSALI SPPRTANSSG 180 VKRNMVEGLP AELPIVDVAA RLDGKSSELP ENGALLKDAE ESQDLGGNPV AELTLHEGKE 240 VILVDDNDSE QEDGGSGKVD ENAPRVGLRF KTYDDALKYY KQYAVDSGFS AIILKSSYLK 300 SGVCRRLVLG CSRAGRGRAN ACYLSRESTK INCPARISLK LRQDRWLHID DAKLDHNHPP 360 NQSSVSHMNC YKKLTDAKNE ETASRSKGRR NVPIGDKEQG SFTEIGRLKF GEGDDEYIHN 420 KYEIILENKY KKELQADEES SHRTPLTVTK FYMEEQLAKE YTINMFKKFQ DELKATMYCD 480 GMPTKVDGQF VTFVVKECSY MEDGKEKEGR NYEVYFCKQE LVNCECECGF FQFTGILCRH 540 ILSVFKLQEM FEIPIRFVLD RWKRDYKKLH ADALCKNDEM LPDVLPDGII ERHDILFTQS 600 RQVLNLGFIS EGRYLVALKL LRQAEKTLLD DGLPRDRQAG LLLSFEAEAP ENDEGIFSPE 660 FSEGVKNSQS TNAKRRGRPT KKLIESDSDT VLRPNKEQDF LRSSFVTDES NMIQGAPSAS 720 HLESPHLGVD LMEGIPPNLS FNHHFGMDVN HQHQVPNQPR MLPSNFLQAP SDSQGYGNQW 780 AFPTLQVFLQ MYIYKEMTDT MTPPALVITT LTNLRILRQQ HIKRQDPSLE ESDGEDIGVP 840 EVGMVFNNHT EVNRFYRRYA RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR 900 KRASSTTNCP AKIRVKLWGD KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM 960 GGPGAMPVEE PSKMPVDKLG ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTQQLS 1020 KVYTHNIFKK FQDEIEAIMY CHVSFINVDG LISTFDVKEW IFLEDGKRTM SKIFTVTYNT 1080 DKNDLTCICG GFQFNGILCR HSLSVLKFQQ VREIPPHYVL DRWKKDFRQL HVMGRPSSDV 1140 VPNNRVDRYD YLSMRCLQLV DSAVLSDKYR LALRLVREME KFMLNSNTHD DTQPRIKSRV 1200 PKANKPNTVV GQNLVNVGTY NGNDGPKATT EASSLTQGLD VQKGGAEKGI VPAGYIGLPA 1260 NVQQFVGSQT AIRPSIVYMV PSGVDPQAFG NGVLMPVVYQ QMFQVPQQPN GTIPDTSANG 1320 KRKRPRAQKP TETSEQSNGT PATGPTSG

Sequence ? help Back to Top

Protein Sequence Length: 1348 aa Download sequence Send to blast

MAAEGGSASA GQKVPLIDAS MAPKMEEACP TTPEEPRHLS PADERLAAKE SDGELNKSHA  60
EVCREADKNS AAYLLAKRAK LQALIKEEWA KMDFSRVHVG DWDEEAGCYK YVQLKSCITE  120
SPYKPLSCLC FHESKFGGLS PNRSSGRRDT LIGPVCCGNL WSSGRCSALI SPPRTANSSG  180
VKRNMVEGLP AELPIVDVAA RLDGKSSELP ENGALLKDAE ESQDLGGNPV AELTLHEGKE  240
VILVDDNDSE QEDGGSGKVD ENAPRVGLRF KTYDDALKYY KQYAVDSGFS AIILKSSYLK  300
SGVCRRLVLG CSRAGRGRAN ACYLSRESTK INCPARISLK LRQDRWLHID DAKLDHNHPP  360
NQSSVSHMNC YKKLTDAKNE ETASRSKGRR NVPIGDKEQG SFTEIGRLKF GEGDDEYIHN  420
KYEIILENKY KKELQADEES SHRTPLTVTK FYMEEQLAKE YTINMFKKFQ DELKATMYCD  480
GMPTKVDGQF VTFVVKECSY MEDGKEKEGR NYEVYFCKQE LVNCECECGF FQFTGILCRH  540
ILSVFKLQEM FEIPIRFVLD RWKRDYKKLH ADALCKNDEM LPDVLPDGII ERHDILFTQS  600
RQVLNLGFIS EGRYLVALKL LRQAEKTLLD DGLPRDRQAG LLLSFEAEAP ENDEGIFSPE  660
FSEGVKNSQS TNAKRRGRPT KKLIESDSDT VLRPNKEQDF LRSSFVTDES NMIQGAPSAS  720
HLESPHLGVD LMEGIPPNLS FNHHFGMDVN HQHQVPNQPR MLPSNFLQAP SDSQGYGNQW  780
AFPTLQVFLQ MYIYKEMTDT MTPPALVITT LTNLRILRQQ HIKRQDPSLE ESDGEDIGVP  840
EVGMVFNNHT EVNRFYRRYA RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR  900
KRASSTTNCP AKIRVKLWGD KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM  960
GGPGAMPVEE PSKMPVDKLG ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTQQLS  1020
KVYTHNIFKK FQDEIEAIMY CHVSFINVDG LISTFDVKEW IFLEDGKRTM SKIFTVTYNT  1080
DKNDLTCICG GFQFNGILCR HSLSVLKFQQ VREIPPHYVL DRWKKDFRQL HVMGRPSSDV  1140
VPNNRVDRYD YLSMRCLQLV DSAVLSDKYR LALRLVREME KFMLNSNTHD DTQPRIKSRV  1200
PKANKPNTVV GQNLVNVGTY NGNDGPKATT EASSLTQGLD VQKGGAEKGI VPAGYIGLPA  1260
NVQQFVGSQT AIRPSIVYMV PSGVDPQAFG NGVLMPVVYQ QMFQVPQQPN GTIPDTSANG  1320
KRKRPRAQKP TETSEQSNGT PATGPTSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538893.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119319	0.0	AK119319.1 Oryza sativa Japonica Group cDNA clone:001-130-H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626730.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	B9F100	0.0	B9F100_ORYSJ; Uncharacterized protein
TrEMBL	I1P227	0.0	I1P227_ORYGL; Uncharacterized protein
STRING	OMERI02G22170.3	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	6e-29	FAR1-related sequence 6