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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN538873.1_FGP012 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 464aa MW: 51549.8 Da PI: 5.0441 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN538873.1_FGP012 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.7 | 1.6e-11 | 264 | 310 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N +f +Lr l P++ +K++ a+i+ A+eYI +L
KN538873.1_FGP012 264 KANFATERERREQLNVKFRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310
68899***********************.....9***************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0048658 | Biological Process | anther wall tapetum development |
GO:0052543 | Biological Process | callose deposition in cell wall |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MIVGAGYFED SHDQSLMAGS LIHDSNQAPA SSENTSIDLQ KFKVHPYSTE ALSNTANLAE 60 AARAINHLQH QLEIDLEQEV PPVETANWDP AICTIPDHII NHQFSEDPQN ILVEQQIQQY 120 DSALYPNGVY TPAPDLLNLM QCTMAPAFPA TTSVFGDTTL NGTNYLDLNG ELTGVAAVPD 180 SGSGLMFASD SALQLGYHGT QSHLIKDICH SLPQNYGLFP SEDERDVIIG VGSGDLFQEI 240 DDRQFDSVLE CRRGKGEFGK GKGKANFATE RERREQLNVK FRTLRMLFPN PTKNDRASIV 300 GDAIEYIDEL NRTVKELKIL VEQKRHGNNR RKVLKLDQEA AADGESSSMR PVRDDQDNQL 360 HGAIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKANSL LHAAKVLDEF QLELIHVVGG 420 IIGDHHIFMF NTKVSEGSAV YACAVAKRLL QAVDVQHQAL DIFN
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK119509 | 0.0 | AK119509.1 Oryza sativa Japonica Group cDNA clone:001-134-F08, full insert sequence. |