PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

KN538871.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 1065aa MW: 118049 Da PI: 6.8939

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538871.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	65.7	8.3e-21	414	468	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 lrW+ +LH+ Fveav+ GG+ +A P ++ +++m+v gLt +++kSHLQkYR KN538871.1_FGP003 414 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTGLTTHNIKSHLQKYRE 468 89**********************777222667889**************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07847	1.3E-58	75	281	IPR012864	Cysteine oxygenase/2-aminoethanethiol dioxygenase
Gene3D	G3DSA:2.60.120.10	1.5E-13	97	232	IPR014710	RmlC-like jelly roll fold
SuperFamily	SSF51182	1.12E-26	99	241	IPR011051	RmlC-like cupin domain
PROSITE pattern	PS00061	0	273	301	IPR020904	Short-chain dehydrogenase/reductase, conserved site
SuperFamily	SSF46689	8.96E-12	408	470	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-19	410	469	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-16	414	468	IPR006447	Myb domain, plants
Pfam	PF10225	7.4E-63	714	985	IPR019358	NEMP family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Sequence ? help Back to Top
Protein Sequence Length: 1065 aa Download sequence Send to blast
MAGSASFPVV VVDSALRPEA VEGQGAAAAV APKTVTESES SASASMELPE EQVEEQAKKR 60 KRDPAPDVGS SSMDDGIGPD DLKLGTVLDT SEVTRAAAFR RRDPIQVIGG NYLYECDNFT 120 VAVFYLPAGT VMPLHDHPGM TVFSKLLAGS VHVQSFDWVS PSVYGSGGKR AVHSKNTKLV 180 KKVLDHVVEA GCGTWVLYPS TGGNLHRFVA GVDGPCAFLD VLTPPYSEGR LRRCTFYRDY 240 PFQLHRNHRF GRNLSAQEKS QFAWLRPINA SAPPDLRIVP LMFAAYGATK RSVVHLTKSL 300 QPGMVTTDLL MSGATTKQAK FFINILAEPP NVVADYLVPN IRAIPTKQSM KPTYIRFLTG 360 LKAYSRIFSR IAFGARRNKI MSNSQPAQED DASYMSSILV SRLIRAMQPT RSYLRWSDDL 420 HKMFVEAVAY HGGPYEAKPT AVKETMQAMG VTGLTTHNIK SHLQKYRESF SSGAGSLHDH 480 DLLGTTSPSK EALDLTSEMV RDNDAAMAEI EMLNDLLLDH DIEMVETSLS VDDLQMMEKE 540 LMSEIKLIEH NFEISESALD EYMDDLANYA FDLTASLAAL LIISTGDDTA AFDSAAVGRS 600 IKDVSLENPE VTFVPSSLGG QFCERVRLSG IPKLHIGSYA NQIRVKMNVS QSMPEKFHWK 660 IEICFHGNAS MGLCQCVTGE WQNLQNGMWN AVKSPYGNKY VDVKVADKTS TRFSISIQEE 720 FQKWRLACLG IGFILLFLSP IVSKWAPFYY SSSMALGVLL VVLIVLFQGM KLLPMGRKSL 780 FYLTIYGSVV GVGSYAVHYF STLVASILEN FGLSEEIHNP VSIFLLVAIV LTGAGFGYWM 840 VRRFILSKDG SVDAGIAQFV KWAMRVVAIC FVMQSTLDPL LALFALAASW WICSVFTAYR 900 APKSMTLKQK QSKAFTQPMY NKGSPNPRQI QFLSPSKRDI GRTTSNSSAT QYGWSNLANG 960 GLVSPTLTKR VVPDNQDEDH YSTFHNIQPR KYSKEEWDDF TQKSTRKALM ECTATPEFAR 1020 WVADNAHRLR VEQQDDASED ELIESSSNSS EETAQEADTG LFRWY

Sequence ? help Back to Top

Protein Sequence Length: 1065 aa Download sequence Send to blast

MAGSASFPVV VVDSALRPEA VEGQGAAAAV APKTVTESES SASASMELPE EQVEEQAKKR  60
KRDPAPDVGS SSMDDGIGPD DLKLGTVLDT SEVTRAAAFR RRDPIQVIGG NYLYECDNFT  120
VAVFYLPAGT VMPLHDHPGM TVFSKLLAGS VHVQSFDWVS PSVYGSGGKR AVHSKNTKLV  180
KKVLDHVVEA GCGTWVLYPS TGGNLHRFVA GVDGPCAFLD VLTPPYSEGR LRRCTFYRDY  240
PFQLHRNHRF GRNLSAQEKS QFAWLRPINA SAPPDLRIVP LMFAAYGATK RSVVHLTKSL  300
QPGMVTTDLL MSGATTKQAK FFINILAEPP NVVADYLVPN IRAIPTKQSM KPTYIRFLTG  360
LKAYSRIFSR IAFGARRNKI MSNSQPAQED DASYMSSILV SRLIRAMQPT RSYLRWSDDL  420
HKMFVEAVAY HGGPYEAKPT AVKETMQAMG VTGLTTHNIK SHLQKYRESF SSGAGSLHDH  480
DLLGTTSPSK EALDLTSEMV RDNDAAMAEI EMLNDLLLDH DIEMVETSLS VDDLQMMEKE  540
LMSEIKLIEH NFEISESALD EYMDDLANYA FDLTASLAAL LIISTGDDTA AFDSAAVGRS  600
IKDVSLENPE VTFVPSSLGG QFCERVRLSG IPKLHIGSYA NQIRVKMNVS QSMPEKFHWK  660
IEICFHGNAS MGLCQCVTGE WQNLQNGMWN AVKSPYGNKY VDVKVADKTS TRFSISIQEE  720
FQKWRLACLG IGFILLFLSP IVSKWAPFYY SSSMALGVLL VVLIVLFQGM KLLPMGRKSL  780
FYLTIYGSVV GVGSYAVHYF STLVASILEN FGLSEEIHNP VSIFLLVAIV LTGAGFGYWM  840
VRRFILSKDG SVDAGIAQFV KWAMRVVAIC FVMQSTLDPL LALFALAASW WICSVFTAYR  900
APKSMTLKQK QSKAFTQPMY NKGSPNPRQI QFLSPSKRDI GRTTSNSSAT QYGWSNLANG  960
GLVSPTLTKR VVPDNQDEDH YSTFHNIQPR KYSKEEWDDF TQKSTRKALM ECTATPEFAR  1020
WVADNAHRLR VEQQDDASED ELIESSSNSS EETAQEADTG LFRWY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538871.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066127	0.0	AK066127.1 Oryza sativa Japonica Group cDNA clone:J013052K14, full insert sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-12	G2-like family protein