PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538861.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 928aa    MW: 105489 Da    PI: 9.2561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538861.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66e-15361171198
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +++ +++p kf++++gg+   s t++l++++g    v++  + +++++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +f+
  KN538861.1_FGP001  36 DSRRSMIIPCKFVNHFGGD--FSGTIKLQSPNGVLHVVEV--TECKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRF--EVLIFD 117
                        455669*******888999..7779***************..99999**************************8888888..888887 PP
2B3391.4e-121452192598
                        TT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
                 B3  25 ehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                         h   +++s+t+tl+   ++++W  ++  r+  ++ +l++ W eFvk+n+++e D++vF  +++  ++f+++v+++r
  KN538861.1_FGP001 145 VHF--PHKSVTVTLQRpCKSKKWHPRFYKRRDARMNILRGSWVEFVKDNRVQEQDICVFVPTKDarRNFTFTVHLLR 219
                        333..56899******5677*******77888889*************************66442577888887776 PP
3B341.91.7e-134325061797
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a++++eg++++F+++++s+    v ++
  KN538861.1_FGP001 432 IMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVLQCGWEAFVDAHNIQEGESLLFRHIENSRY--EVLIL 506
                        579****888888..5669***************..*******************************9986655..66665 PP
4B3391.4e-126367191699
                        EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        lv++ ++a+ h   + e+ t+tl+ +s  ++W  ++     ++ ++l++ W++Fv++n L+e D+++F  ++  ++f+++v+++r+
  KN538861.1_FGP001 636 LVISSRYASVHF--PCETATITLQRPSKrKKWYPRFYKIIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFTFTVHLLRA 719
                        799999998886..335669*****66659******55666666*************************88666*******99986 PP
5B347.82.6e-158349151696
                        EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        l l+ ++a+++   +k +++tl+l + +g  W+++l +    +k++r +lt+GW++F+++n+L++gDf++F+l+++++++l++ v
  KN538861.1_FGP001 834 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYRKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKKKLTMEV 915
                        7788999999952.33.3346665.569********7765544445589***********************9966555444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-2224121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.61726119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1926120IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-1928117No hitNo description
SMARTSM010198.7E-1029119IPR003340B3 DNA binding domain
PfamPF023621.8E-1337117IPR003340B3 DNA binding domain
SMARTSM010190.08121221IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-14135219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-13137219No hitNo description
Gene3DG3DSA:2.40.330.102.5E-13137219IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-10142219IPR003340B3 DNA binding domain
PROSITE profilePS508639.968153221IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-9306385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-7311386IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.71321417IPR003340B3 DNA binding domain
CDDcd100171.99E-15417507No hitNo description
SMARTSM010193.6E-4422509IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941432509IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-16432510IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17432515IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-11432505IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17613720IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-18613719IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0018620720IPR003340B3 DNA binding domain
CDDcd100171.92E-16620718No hitNo description
PROSITE profilePS5086310.179621720IPR003340B3 DNA binding domain
PfamPF023625.6E-11636719IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17809918IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.744819921IPR003340B3 DNA binding domain
SMARTSM010191.2E-8819921IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-15832918IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-14834919No hitNo description
PfamPF023621.2E-12834918IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MAGSGSCMKK SCVCCQRYLE HLGGKMNCFV RRMTADSRRS MIIPCKFVNH FGGDFSGTIK  60
LQSPNGVLHV VEVTECKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD  120
CEKERTVPLN MNLLSQVISF CYAEVHFPHK SVTVTLQRPC KSKKWHPRFY KRRDARMNIL  180
RGSWVEFVKD NRVQEQDICV FVPTKDARRN FTFTVHLLRV AAAYSRGGTG VDRAGSSLGR  240
TEVKSASEIS IKEEPIDQEE NVSSRNRNGV SDESEEDEDS EGPAHPPYIV PCKSRLSRLQ  300
KKIVEEKVRS IQSKFPVYVA IMKKSNVERS ASRCQLELGA RFAAAVHLPD RRQTVVLQRR  360
GERWATVMQI RSGTRRLLIS GWHRFQVVGV LKQLHSMIIK ETKAEAEFIK EGVINRSESD  420
LSCKFELSWL EIMPDRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT VLQCGWEAFV  480
DAHNIQEGES LLFRHIENSR YEVLILDSDD CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS  540
SNDTTQSSRS RNTANLTAMC SSSEKSGEDS LSGYEFHESV EPQTPSGSDY VLSRRTYLSE  600
AQKERVVAHI QDIQPEITVF VAVMKKCNLQ SPAPYLVISS RYASVHFPCE TATITLQRPS  660
KRKKWYPRFY KIIDKSDHML RGQWQNFVHD NCLQEEDICL FVPTKGGRNF TFTVHLLRAE  720
ATHSRDGTDV HKIGSSQNKR NSKMASQVHI KEAPGGDVSS ESNKHGVSHG SLESEDSDGP  780
SEPPYISSMR RRLSQLQKKT VEEKVRAIQS EIPICVATIS KLAGSGGKGK FRGLELSSRY  840
AASYLPDKNH QTLVLQCKGM IWQINLVVRR RYRKGKRWFL TAGWRKFAHD NRLRVGDFCL  900
FELKKKKKKK LTMEVHIISN LQRYPEVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1902910LKKKKKKKL
2903909KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538861.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193990.0AK119399.1 Oryza sativa Japonica Group cDNA clone:001-132-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLI1PDJ00.0I1PDJ0_ORYGL; Uncharacterized protein
STRINGOMERI03G23080.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-13B3 family protein