PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538857.1_FGP022
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 719aa    MW: 79363.4 Da    PI: 6.7316
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538857.1_FGP022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18563357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le++++++++ps ++r++L + +    +++ +q+kvWFqNrR ++k+
  KN538857.1_FGP022  5 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 63
                       5678****************************************************996 PP
2START1556.3e-491433442198
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g++
  KN538857.1_FGP022 143 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTI 233
                        7899******************************************************9999999999.***********999999999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl+++++++
  KN538857.1_FGP022 234 ELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 325
                        *****************************************9999998888899************************************** PP

                        HHHHHHHHHHHHHHHHHHH CS
              START 180 llrslvksglaegaktwva 198
                        +lr+l++s+++ ++k+++a
  KN538857.1_FGP022 326 VLRPLYESSRVVAQKMTTA 344
                        ***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.483164IPR001356Homeobox domain
SMARTSM003891.1E-15268IPR001356Homeobox domain
CDDcd000862.77E-16565No hitNo description
SuperFamilySSF466894.71E-16568IPR009057Homeodomain-like
PfamPF000464.0E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-18760IPR009057Homeodomain-like
CDDcd146861.49E-65796No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-461111No hitNo description
PROSITE profilePS5084826.319133334IPR002913START domain
CDDcd088751.66E-70137342No hitNo description
Gene3DG3DSA:3.30.530.202.1E-21142325IPR023393START-like domain
SMARTSM002341.6E-33142352IPR002913START domain
SuperFamilySSF559612.2E-35143333No hitNo description
PfamPF018529.8E-47143344IPR002913START domain
PfamPF086705.0E-15670718IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERV YAECPKPSSS RRQQLLRDCP ILANIEPKQI KVWFQNRRCR  60
DKQRKEASRL QAVNRKLTAM NKLLMEENER LQKQVSQLVH ENAYMKQQLQ NPSLGNDTSC  120
ESNVTTPQNP LRDASNPSGL LTIAEETLTE FLSKATGTAV DWVPMPGMKP GPDSFGIVAV  180
SHGCRGVAAR ACGLVNLEPT KIVEILKDRP SWFRDCRSLE VFTMFPAGNG GTIELVYMQM  240
YAPTTLVPAR DFWTLRYTTT MEDGSLVVCE RSLSGSGGGP STASAQQFVR AEMLPSGYLV  300
RPCEGGGSIV HIVDHLDLEA WSVPEVLRPL YESSRVVAQK MTTAKYPLFP YDWSFPQDLQ  360
LHGFNDAISG FNDDGWSVMG GDGIEDVIIA CNAKKVRNTS TSANAFVTPG GVICAKASML  420
LQSVPPAVLV RFLREHRSEW ADYNFDAYSA SSLKTSSCSL PGLRPMRFSG SQIIMPLAHT  480
VENEEILEVV RLEGQALTHD DGLMSRDIHL LQALRHIRQI AQETSGEVVY ALGRQPAVLR  540
TFSQRLSRGF NDAISGFNDD GWSVMGGDGI EDVIIACNAK KVRNTSTSAN AFVTPGGVIC  600
AKASMLLQSV PPAVLVRFLR EHRSEWADYN FDAYSASSLK TSSCSLPGLR PMRFSGSQII  660
MPLAHTVENE EGYVYLPGGV CLSGMGRHVS FEQAVAWKVL GEDNNVHCLA FCFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538857.1_FGP022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
SwissprotQ9AV490.0HOX9_ORYSJ; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0D3HES90.0A0A0D3HES9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D3HET00.0A0A0D3HET0_9ORYZ; Uncharacterized protein
STRINGOBART10G13430.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]