PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538855.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22530.3 Da PI: 9.7457 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 6 | 54 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + KN538855.1_FGP004 6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 54 59*******9.**********8.....334*********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.83E-32 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 21.878 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-40 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-12 | 7 | 51 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVQPKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AVLMSGRNAK 60 TNFPVQRNST GDLATATDRD ARSNGGSRNS SAGNLSQILS AKLRKCCKAP SPSLTCLRLD 120 PEKSHIGVWQ KRAGARADSN WVMTVELNKE VEPTEPAAQP TSTATASQVT MDDEERIALQ 180 MIEELLSRSS PASPSHGEGE GSFVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 6 | 69 | 4 | 68 | ATERF1 |
3gcc_A | 4e-17 | 6 | 69 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538855.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ468387 | 0.0 | DQ468387.1 Oryza sativa (japonica cultivar-group) wax transcription factor 1 (WTF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627194.1 | 1e-149 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 2e-77 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0D3F246 | 1e-148 | A0A0D3F246_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YNW7 | 1e-148 | A0A0D9YNW7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0G3E9 | 1e-148 | A0A0E0G3E9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2X252 | 1e-148 | A2X252_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NYC4 | 1e-148 | I1NYC4_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G07820.1 | 1e-149 | (Oryza glumipatula) | ||||
STRING | ONIVA02G09300.1 | 1e-149 | (Oryza nivara) | ||||
STRING | ORGLA02G0073000.1 | 1e-149 | (Oryza glaberrima) | ||||
STRING | OBART02G07740.1 | 1e-149 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3717 | 38 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 5e-64 | ERF family protein |