PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538852.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 968aa    MW: 107488 Da    PI: 6.4782
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538852.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.67.4e-2182169183
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  KN538852.1_FGP001  82 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI 169
                        99*****************************954.4444.49***********************************************8 PP
2Auxin_resp116.91.7e-38181264183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++
  KN538852.1_FGP001 181 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 264
                        79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-3772181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-3475183IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-1881168No hitNo description
PfamPF023628.3E-1982169IPR003340B3 DNA binding domain
PROSITE profilePS5086310.82882181IPR003340B3 DNA binding domain
SMARTSM010194.0E-1582181IPR003340B3 DNA binding domain
PfamPF065072.1E-33181264IPR010525Auxin response factor
PfamPF023094.0E-10841935IPR033389AUX/IAA domain
PROSITE profilePS5174526.775850934IPR000270PB1 domain
SuperFamilySSF542773.83E-7862929No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MASSGGGGDN FNLFATFNYE HTTFVNLLSV LSKFSYTADP DTDEVYARMT LQPVSNVTQC  60
DKETLLASEL ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ  120
ELQARDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIS DSMHIGILAA  180
AAHAAANNSQ FTIYYNPRAS PSEFVIPFAK YQKAVYSNQL SLGMRFRMMF ETEESGTRRY  240
MGTITGISDL DPVRWKTSHW RNIQVAWDEA APTERRTRVS LWEIEPIIAP FFIYPSPLFT  300
AKRPRLPGMT DDETEMDGLL KRAMPWLGEE ICKKDLNSQN SVVPGLNLAQ WMNMQHSSSL  360
PGTVVQPELL NSLSGKPVQN LAAADLSRQI SFHPQFLQQN NIQFNTALVP QQNQQTEQLA  420
KVIPTSNQLG SVIIPQKVVQ DCNSEQRQHV VAQPVQGSQP NINIPQPQLV VQAQLQQPQV  480
ILQAQLQQPQ VVVQAQLQQT QPSVQSHTVL QGGLQQIQLL QQQQPHVADH QMKLQLLKAL  540
QPQQPLISEQ QKMLLDLQQQ VISSQSAPQQ CVQQKVQSHQ VQDLTGNVIP NSKSDIATSM  600
GASSLHVAGG RQLLKTDDVP STSTSPSTNS NPVLLQSIPS SSKNQSLTTA GKTSQSSVVL  660
GPTIEQDTKP YQNVKQTVMI PKTTEQRPAT GQDCINNNPQ MDYLDTSSSA TSVCLSQADG  720
SLQQNFPPSS FHQHHLLKDT VPDSEFEVTD PRNNLLFGVN IDGQLGLPLN ADLLANDIGT  780
DKYMDQLPGN GISNFISSKD SQQELSSSMI SHSFGVADMA FNSIDSAIND TPFLNRNSRS  840
AAGPAHQRMR TYTKVHKRGA VGRSIDINRY SGYDELKHDV ARMFGIEGQL GDQNRVGWKL  900
VYEDHEKDVL LVGDDPWEDF VKCVRCIRIL SPQEEMQMRL VGDFGDSFLP NQACSSSDGG  960
HPWRITGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-10727285106388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538852.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973925.10.0auxin response factor 21
TrEMBLK3YFY70.0K3YFY7_SETIT; Auxin response factor
STRINGSi013155m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-153auxin response factor 19