PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

KN538850.1_FGP010

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 368aa MW: 41260.1 Da PI: 9.9084

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538850.1_FGP010	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.5	4.1e-16	177	227	3	52
RWP-RK 3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 k+++ +dl++yF+ + k+AA L +++T+LK CR + ++RWP+R+i+sl KN538850.1_FGP010 177 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 227 899***************84499*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.22	157	247	IPR003035	RWP-RK domain
Pfam	PF02042	9.3E-17	178	227	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MVPVGSIECL RKRCRQLRVL IHVNDHRKAV VVLHAGEDGK PDHVLVQNVS PEGEASVQST 60 YRIDVSRETP ESQAEMLNDW YTSFRMDTTG VLYDSDQNEK YPKVIYGVPR GHPGGDVPRS 120 LAILPPAPKK NQHGKAPATE STSSLVEEPL LLVQTDQTAA IGKRKKFTFP DQRKRVKTMT 180 KKDLESYFHI TQKSAAHIGL SIGTTALKNL CRANDLPRWP YRQIASLDNK FNNNLKKQIT 240 GWNLGKAVQG VTKAFKLRKE KEEFYQKIMS SMPEQLQDRW QPAHRCSTSS NIPSNGATAG 300 GDTGSGKLPM VPMGSIECLR KRCRQLRVLI HVNGETLESQ AEMLNGWYTS FRMDTTGVLY 360 DSDKNGIN

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MVPVGSIECL RKRCRQLRVL IHVNDHRKAV VVLHAGEDGK PDHVLVQNVS PEGEASVQST  60
YRIDVSRETP ESQAEMLNDW YTSFRMDTTG VLYDSDQNEK YPKVIYGVPR GHPGGDVPRS  120
LAILPPAPKK NQHGKAPATE STSSLVEEPL LLVQTDQTAA IGKRKKFTFP DQRKRVKTMT  180
KKDLESYFHI TQKSAAHIGL SIGTTALKNL CRANDLPRWP YRQIASLDNK FNNNLKKQIT  240
GWNLGKAVQG VTKAFKLRKE KEEFYQKIMS SMPEQLQDRW QPAHRCSTSS NIPSNGATAG  300
GDTGSGKLPM VPMGSIECLR KRCRQLRVLI HVNGETLESQ AEMLNGWYTS FRMDTTGVLY  360
DSDKNGIN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538850.1_FGP010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005419	2e-97	AP005419.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0046G12.
GenBank	AP005720	2e-97	AP005720.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1123_B08.
GenBank	AP014965	2e-97	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	2e-97	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696653.1	1e-149	PREDICTED: uncharacterized protein LOC107304984
TrEMBL	A0A0P0XNA3	0.0	A0A0P0XNA3_ORYSJ; Os09g0444100 protein
STRING	OS09T0444100-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15217	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-08	RWP-RK domain-containing protein