PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538840.1_FGP012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 106aa MW: 11723.6 Da PI: 10.6309 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.9 | 3.6e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ rqvtfskRr g+lKKA+E+ vLCd++va i+fs +g+l+ y+s KN538840.1_FGP012 10 RIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYAS 59 8**********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.072 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-27 | 2 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.25E-35 | 2 | 65 | No hit | No description |
PRINTS | PR00404 | 3.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS 60 HTTNLTGALD GATFLRHYYC RWGNTTSTIM GYLLASKTIS FVGGMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
6byy_A | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538840.1_FGP012 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731752 | 1e-100 | AL731752.4 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-100 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 1e-100 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619865.2 | 3e-38 | MADS-box transcription factor 20 | ||||
Swissprot | Q2QQA3 | 3e-39 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | A0A0E0FCB9 | 1e-37 | A0A0E0FCB9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B9GDA2 | 1e-39 | B9GDA2_ORYSJ; Uncharacterized protein | ||||
STRING | OMERI12G08810.1 | 3e-38 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 6e-28 | AGAMOUS-like 8 |