PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538813.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 543aa    MW: 59916.1 Da    PI: 5.7638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538813.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000522748223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       kC++C++ F ++ n++rH r+H
  KN538813.1_FGP004 27 KCTKCPREFCSSINYRRHTRVH 48
                       7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2862648IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK  60
NRDNIAAFWD KLMLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG  120
NKLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN  180
AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ  240
RLKDLKDEDV TDRFPGSVDG TTDSSGILSL KEATSDPGLY EQEDTQLPTP VASEDNSSFA  300
DLPVEHDIHD PGHEVNPSVT LNQQVFSRHR VGRTENFAQN SFASGGSAIG SKHPASVRHS  360
HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE  420
DGSECLEDNQ YSKEYPIPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVNITPTAQ  480
DHSSSSVMTD GNNCSSCCNA GLAEGGGLRG TIFSSKEAAA FLSQRWKEAI NADHVKLVLC  540
PEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227234ERKRMKKL
2232242KKLRQKEQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538813.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020350.0AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611822.10.0uncharacterized protein LOC4347911
RefseqXP_015611823.10.0uncharacterized protein LOC4347911
TrEMBLA0A0E0B6V50.0A0A0E0B6V5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GFL40.0A0A0E0GFL4_ORYNI; Uncharacterized protein
STRINGONIVA03G00390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-85C2H2-like zinc finger protein