PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538809.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 329aa    MW: 36958.4 Da    PI: 5.3906
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538809.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.12.6e-15119168455
            G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        l Wtp L ++F++a+e L G+  A Pk+i+ +m+v+ + ++++  HLQk+Rl
  KN538809.1_FGP013 119 LMWTPHLQKKFLHALEIL-GE-DASPKQIKMIMDVDNIDRKQISTHLQKHRL 168
                        78****************.55.5****************************8 PP
2Response_reg30.71.6e-111598283
                       EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
       Response_reg  2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83
                       +++d+++  ++  r+++  + ++  v++++++ +al+ l++k   ++l+l D++m +m+G+e+lk  re ++++++i v+++++ 
  KN538809.1_FGP013 15 MVIDEDKCHADSTRSMICtQLNF-CVTVFTSPIKALDFLQNKAegVHLVLADVQMEEMNGFEFLKFARELHKSIQVISVGDKSTC 98
                       78999999999999887779999.***************999999**********************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.18E-111191IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-121293No hitNo description
PROSITE profilePS5011012.61813137IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.31E-101590No hitNo description
PfamPF000722.0E-81598IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466895.12E-13113172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-15114172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-14119169IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAQNEGIPTG RLSAMVIDED KCHADSTRSM ICTQLNFCVT VFTSPIKALD FLQNKAEGVH  60
LVLADVQMEE MNGFEFLKFA RELHKSIQVI SVGDKSTCAN EMNSFPENQK DGTKRKYYLM  120
WTPHLQKKFL HALEILGEDA SPKQIKMIMD VDNIDRKQIS THLQKHRLQL KKKLRKASFT  180
KGSNEDTSNP SAKNHLTCRT MTLQPHPYTN QPAETTMQIH SEDVEHDDVY DAMRRALQDG  240
TAFDESKYSS DPFGNEDEDV VGDGCADKAN AIDSSGDHYQ VAVVLTTPHN VDYTQEIMNK  300
VTTSDDVQVT RGGKATVSRL VDYSDSDSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164174KHRLQLKKKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538809.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-132PREDICTED: two-component response regulator ORR29-like
SwissprotQ7XKS90.0ORR28_ORYSJ; Two-component response regulator ORR28
TrEMBLA0A0E0P7N90.0A0A0E0P7N9_ORYRU; Uncharacterized protein
STRINGORUFI04G09650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-07G2-like family protein