 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KN538807.1_FGP010 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
B3 |
| Protein Properties |
Length: 444aa MW: 49900.8 Da PI: 7.1626 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN538807.1_FGP010 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 60.5 | 2.8e-19 | 310 | 405 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
k+lt+sdv++ gr+v+pk+ ae+h + ++e++tl++ d + +W++k+++ ++ks++yvl+ + +Fvk +gL++gD+++++ + +++
KN538807.1_FGP010 310 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SES 399
89************************888999********7778*******9989999999**99.9*******************43.377 PP
E..EEE CS
B3 90 felvvk 95
+++vv+
KN538807.1_FGP010 400 GKFVVR 405
777775 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009657 | Biological Process | plastid organization |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 444 aa
Download sequence Send
to blast |
MADARGSSSS SGDGGGGEGK GGGSHGDFVG GGQHNRYHGI LGAVPPPNVG RQNIVHHQYP 60
AASLIHQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN 120
NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH 180
PAAIEDHHAP LFHSNNHDID PGLEKGHYYI RVNPQGYQQP WESRIKWFLQ SSWETDTCME 240
LTSPELRPQK PPPLPPPEDP PIVFRRSDMD SEKNDDPDQT PVSEPPSMNQ NGENLIIRFN 300
CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY 360
RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESG KFVVRGEKAI KPNAIMPVVD 420
CSCKNELNKS EECGFTISLQ TKKT
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j9c_A | 1e-34 | 299 | 411 | 4 | 117 | B3 domain-containing transcription factor LEC2 |
| 6j9c_D | 1e-34 | 299 | 411 | 4 | 117 | B3 domain-containing transcription factor LEC2 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK072874 | 0.0 | AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence. |
