PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538802.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 358aa    MW: 39039.6 Da    PI: 4.4622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538802.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-1997146255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  KN538802.1_FGP008  97 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 146
                        69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.93397154IPR001471AP2/ERF domain
SMARTSM003801.2E-3697160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3297155IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2297155IPR016177DNA-binding domain
CDDcd000181.95E-3297155No hitNo description
PRINTSPR003672.2E-1198109IPR001471AP2/ERF domain
PfamPF008475.7E-1298146IPR001471AP2/ERF domain
PRINTSPR003672.2E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLRKGKAAAA VEEDFEADFR EFERGMSDDE AEGGGGEEEE EEEDDVVVVV PPPAAARFVV  60
RAAAKAAPPT ADGMLTTKLV QHDGPTARSA KRKRKNQYRG IRQRPWGKWA AEIRDPSKGV  120
RVWLGTYNTA EEAARAYDAE ARKIRGKKAK VNFPDEPAVA QKLSLKQNAA KQEKLAPPLK  180
TCGDDAFFQL NSSDNDLFAM LAKVPAKPAE PVDLMPPVKP LASTETFEMN MLSDTSSNSF  240
GSSDFGWEDD TLTPDYTSVF VPNAAMPAYG EPAYLTGGAP KRMRNNYGIT VPQGNGMPNL  300
AQNMPTFDPE MKYLPLPYVE SSSDESMDNL LQNDATQDGA SNEGIWSLDE LLMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2097154260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2097154563ATERF1
3gcc_A6e-2097154563ATERF1
5wx9_A2e-19971561474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538802.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8313920.0AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLQ5MFV30.0Q5MFV3_ORYSI; BTH-induced ERF transcriptional factor 1
STRINGOMERI09G08700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-27related to AP2 12