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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KN538801.1_FGP004 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | WRKY | ||||||||
| Protein Properties | Length: 1285aa MW: 145522 Da PI: 7.1842 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 59.6 | 6.1e-19 | 1202 | 1262 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
dDg+nWrKY K+ gs++ rs+YrC ++ gC+++k ve +++dp++ +tY eHnh+
KN538801.1_FGP004 1202 DDGWNWRKYSEKDLLGSKYKRSWYRCNQKqstGCMARKIVEPNNDDPNTWLVTYLYEHNHK 1262
8*************************9988889***************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52058 | 1.03E-30 | 256 | 453 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 3.5E-25 | 257 | 450 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.40.50.300 | 6.3E-6 | 504 | 627 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 1.92E-37 | 508 | 744 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 1.4E-34 | 513 | 771 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 1.9E-12 | 514 | 529 | No hit | No description |
| PRINTS | PR00364 | 1.9E-12 | 584 | 598 | No hit | No description |
| PRINTS | PR00364 | 1.9E-12 | 682 | 696 | No hit | No description |
| SuperFamily | SSF52058 | 1.41E-33 | 808 | 1185 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 5.1E-21 | 888 | 1178 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.9E-12 | 1132 | 1148 | No hit | No description |
| Gene3D | G3DSA:2.20.25.80 | 5.6E-19 | 1188 | 1263 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 6.41E-20 | 1194 | 1263 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 22.068 | 1196 | 1264 | IPR003657 | WRKY domain |
| SMART | SM00774 | 3.2E-24 | 1201 | 1263 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 2.2E-17 | 1202 | 1262 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1285 aa Download sequence Send to blast |
MASAGTRRHV RCPKCFSVLQ EPPNAPVYQC GGCGISLRAK IRARDAHALN VATKVQDRDD 60 KLVTGEAVDE LSSTGGTPFS DELSDTAPSS SSMQPGDSQI IVPFSSYWNL IRSTRGCLED 120 LHYQSLLAMI GRNRNKQTTS SMSTTSFQFA CGVDTNKIRY MIPTLDELVR FRSRLSSEPF 180 QYSSAVLAVD SSVARCIRLR RGIMGVLSNE NMEEEHRKLP VHAVDDLDYS WHEHDKVTRM 240 NGQTTQSCLD YLLPTAIRNL LYLDLSNCSN LVQLPDPIYL LPTAIRNLLY LDLSNCSNLV 300 QLPAPLGSLH NLSALNLSCC YSLHALPESL GRLHGLQILL LSFCHKLHNL PVSFGHLSNL 360 RLLDLSGCCS LEMLPDSLVN LSNLLEKLNL SDCIRLKDVP QPFDNLRKLE YLNFSGCHRM 420 NLNVDCLRKL VNLKCLTLSH HTDIKDFPYC YQDLADCLDL SRWLKNNWVH HQCNPKATLL 480 QSYRCHHQSM INRLLSYGSA SEEDDITSEK ILTSICIVGE SGMGKTELLR EIYNDEMIFQ 540 GFHLRIWINM CDKKGLLEKI IEFITCAYCY DAPSSILEET VREELNGKRF LLVLDDADIE 600 NRCFWSDLWK LANLGAVGSA LIVTTRSKEV AKLFGAMQTY YLRSLPSEEC FMVFQEHAII 660 GGFHINDYPQ FTKFGWMIVE KCGGNPLCMK ALSGLLCHSE TGLFEISSLL FEINSLGVGG 720 GILPALRLCY DLLPSRLKQC VKFCSLFPRN YVFFKHHLVQ LWISQGFIYP EEDGQPEDTG 780 LQYFNELFCR SFFQNGPSRD DDHKDKFVMH ELFHDLACSV SKDECFSSGE AFCSLPENIC 840 HLSVVLPDSK SVVLTKVQRH LQSLMVVKRS ASEYPGSFVP LLKILGLNDL LMKCRFLRAL 900 NLSCTTIREL PSSIMKMKHL QFLALNNTKI QSLPAEIGQL QTLQTLELKD CCCLIELPES 960 TMNLTKLRHL DVQKEPGNVH VSMPHGIGQL TDLQTLTVFN TGDDLSHCSI GDLKNLSGLR 1020 GHVHITESFG QRTNPLTTEG KHAPIFPSLE ILNLWEMYSL QFWNGTNNGD FPRLSHLSIS 1080 RCPKLTNLPP LISLLYLSFH CGDQLPAYSE LPSLKSLKIE SFQKLKSVRF CPEMPMLQKL 1140 EISDCKELLS VDGPLLSISN LKVVRCPKLR FGSSSLESCL MWEKLQRDKY TVKYLLKKTT 1200 TDDGWNWRKY SEKDLLGSKY KRSWYRCNQK QSTGCMARKI VEPNNDDPNT WLVTYLYEHN 1260 HKQEARPCDK PSPSDLHVQL ASGNT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 2e-40 | 515 | 1020 | 185 | 687 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KN538801.1_FGP004 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015644838.1 | 0.0 | uncharacterized protein LOC4342906 isoform X2 | ||||
| TrEMBL | A0A0E0FK41 | 0.0 | A0A0E0FK41_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA01G13710.1 | 0.0 | (Oryza nivara) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12577 | 12 | 16 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G01250.1 | 5e-15 | WRKY family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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