PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538795.1_FGP046
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 603aa    MW: 64586 Da    PI: 5.0487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538795.1_FGP046genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05492517123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+  +C + F+++ +L +H ++ +
  KN538795.1_FGP046 492 FQCEidYCRMAFKNRAELSVHKKNtC 517
                        89*******************99866 PP
2zf-C2H212.50.00044517539323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        C+   Cg++F+++ +L+rH++ H
  KN538795.1_FGP046 517 CTvkSCGRHFRSHKYLRRHQSIH 539
                        88889***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035523492514IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009515544IPR007087Zinc finger, C2H2
SMARTSM003550.42515539IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4516539IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280517539IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-9531573No hitNo description
Gene3DG3DSA:3.30.160.605.7E-10540566IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887545574IPR007087Zinc finger, C2H2
SMARTSM003550.04545569IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280547569IPR007087Zinc finger, C2H2
SuperFamilySSF576675.24E-7564598No hitNo description
Gene3DG3DSA:3.30.160.602.3E-7567597IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539575597IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDHVVAPDAI KQKGHIAGRA PEPELRSDPR VGLAERTPVP EDQGRDIDDD PPAKRSLTFT  60
DAAARLEGSG NVGAGVATEP AARVGAPVAN GAVSGQEDRA ATCLADESAA ELIATGVTSL  120
VTGSVTAEPE VLKGASFANA NVTEPRVSER VPLVREAATE PEAEVSVPEV TEGALPDGED  180
AARLEITRGL SQESADKMEV TKGISLVTEA SADSELAQRV PTEPGVELSL PEVTERVPVV  240
TEDFTELGDT FSALHITGFA SLDNEGSVEQ EVTGSGSLVN EATEMEVKEG TCIFTRAAAE  300
LGDTGRVFAC SGDGDIALDE SRPPDCVSEV ANVNIGSAGE AVASKVHPFR DNAGSVGGSI  360
SSTGNGHVSS KSPTADEAAA LGGCTDTPSV SCLSDIVARS IGKSGRTDII CYVRRRGKRK  420
LEMVEVKEEN VEMDDSAICD QYDDKVASER TGPCESVTST AVSVEIKIAD IKRELEDNST  480
ASKGKKKRAK RFQCEIDYCR MAFKNRAELS VHKKNTCTVK SCGRHFRSHK YLRRHQSIHN  540
DDMPYKCPWE GCSMAFKWSW DRGEHFQVHA GKRPYKCTTP GCSKIYKFVS DFTRHKRRCK  600
PQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4349259823129Lysine-specific demethylase REF6
6a58_A1e-4349259823129Lysine-specific demethylase REF6
6a59_A1e-4349259823129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413419RRRGKRK
2413420RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538795.1_FGP046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0E0NPQ50.0A0A0E0NPQ5_ORYRU; Uncharacterized protein
TrEMBLQ8H0840.0Q8H084_ORYSJ; Os03g0148800 protein
STRINGORUFI03G03520.10.0(Oryza rufipogon)
STRINGOS03T0148800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-41relative of early flowering 6