PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538795.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1472aa    MW: 161338 Da    PI: 6.0218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538795.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0513621387123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                         ++C    C+++F +k +L+ H+r+ +
  KN538795.1_FGP006 1362 FQCDieFCDMTFETKAELRAHQRNiC 1387
                         899999*****************877 PP
2zf-C2H212.60.0004313871409323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         C+   Cgk+Fs++ +LkrH+ +H
  KN538795.1_FGP006 1387 CTdeSCGKRFSSHKYLKRHQCVH 1409
                         77778***************998 PP
3zf-C2H213.70.0001914451471123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         ykC+  dCg+sF+  s++ rH ++  H
  KN538795.1_FGP006 1445 YKCSapDCGQSFRYVSDYSRHRKKfnH 1471
                         99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.3E-133164IPR003349JmjN domain
SuperFamilySSF511976.04E-28214395No hitNo description
SMARTSM005588.5E-49230399IPR003347JmjC domain
PROSITE profilePS5118434.774233399IPR003347JmjC domain
PfamPF023733.0E-37263382IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.1E-413561384IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.53813621384IPR007087Zinc finger, C2H2
SMARTSM003551213621384IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00613851414IPR007087Zinc finger, C2H2
SMARTSM003552.313851409IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-613871421No hitNo description
PROSITE patternPS00028013871409IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-713911415IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-1014091465No hitNo description
PROSITE profilePS5015711.96714151444IPR007087Zinc finger, C2H2
SMARTSM003556.6E-414151439IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-1114161439IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014171439IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1014401467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36514451472IPR007087Zinc finger, C2H2
SMARTSM003550.1414451471IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014471471IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1472 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PAPAAASDSS IPPSSSSSPP PASAAVFTTR  120
HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFEAKSRAFS KTHLAGLHEP TALAVESLFW  180
KASVDRPIYI EYANDVPGSG FAAPVQLQRK KKRKRETAPM DEWEKSSGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVELEEV IRVHGYGGNT DRIASLAVLG EKTTLMSPEV LIDNGVPCCR LVQYPGEFVV  360
TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLYLLAVSF  420
ISRNPRELLS GIRTSRLRDR KKEDRELLVK KEFLQDMISE NELICSFLGK KSVDNVVLWE  480
PDLLPSLTAL HPCSSCSKAP EKKGEDGPRI GSTQSSSKDN SSSDGTACMT GTQSKGLSMD  540
SKQAPEGEKL DTDDGDDLPF DLSIDSGSLT CVACGILGYP FMAILQPSRK ALEEISLVDK  600
ERYKLSCEKE ICSNVLPCSP NDGSSGCPLI ANRSSSPVEN ANFSHQDVKP NRSDISLMGK  660
EFNGTLGKHI GTSCSCSSEN TIHPYGDTET PEKKIPSDCP GSELSKQSGR GDVNVPAVEG  720
SDETISWNTG CAFARPRIFC LQHALEIEEL LASKGGVHAL IICHADYVKL KALAISIAEE  780
IEFQFDYKDV ALANASKSDL HLINISIDDE GYEEEGTDWT SRMGLNLKHS SKIRKETSES  840
QEQPPLSFWG LFSKPSPISV VSNLKWLCRK ARTPYKVVGY ASSPDVVATP DKVKPTVTKT  900
QIDTSGNAHE NIESEQTLEQ DCVLQESNDV ADMCKRPKEN DQDGHSLINI PIAVAEYPMM  960
HQVCERPDSP TTVAVSAGKP TREQCGVEST ELSTVQQFLD NGLIAEGGSM NFVSNHEYLE  1020
SDNATSVCKD EQLQVQQDQL AMVLCNNPNT ELVAGELHGG AASSTLENED SCGNTSYCSD  1080
TVLKNSKPDT DDQPETCDRS VVLVTPKSSC DQMISSSDRS CSLTLDCPVS TDAAFSSEKL  1140
SMAHDLMGSE LQAVHNSKAE AAASLTDVKG AKLNGIHTAQ LPHESPSSDF IISEGAQSAS  1200
ATAIPRQNGT SMHTESNSID ILLGVLADES KVSSGKDEVG KASLTLMTLA GNDQSADDGT  1260
QDEVAEITDP SHGFCASDIV SRSIGSSNRT NIICYARRKH KRKSGSEFNI NSPQSLGTFV  1320
RSPCESLRPR TRHAIVEDMA NETKTAEAST ANKRKKAKVE AFQCDIEFCD MTFETKAELR  1380
AHQRNICTDE SCGKRFSSHK YLKRHQCVHR DERPFKCPWD GCPMTFKWLW AQTEHIRVHT  1440
GERPYKCSAP DCGQSFRYVS DYSRHRKKFN HY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-74234138346Transcription factor jumonji (Jmj) family protein
6ip4_A4e-74234138346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214QRKKKRKR
2208214RKKKRKR
3208215RKKKRKRE
412961302RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538795.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0E0CV990.0A0A0E0CV99_9ORYZ; Uncharacterized protein
STRINGOMERI03G03700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein