PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538785.1_FGP045
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 486aa    MW: 52524 Da    PI: 4.9832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538785.1_FGP045genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16115159147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  KN538785.1_FGP045 115 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 159
                        789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-16109163IPR009057Homeodomain-like
PROSITE profilePS5129421.585110164IPR017930Myb domain
TIGRFAMsTIGR015574.8E-16113162IPR006447Myb domain, plants
SMARTSM007172.9E-14114162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10115155IPR009057Homeodomain-like
PfamPF002491.9E-14115158IPR001005SANT/Myb domain
CDDcd001674.01E-11117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGPTSDVAPF PLLSLLLLPS KNLSFLLASS SSRIAAAASS SSAAAPLPPP NSLPSRTAEK  60
DSSDVAINKG LSLDLVKSPL MMNDASATTT AMQPNEGMEE FPVKVRKPYT ITKQREKWTE  120
EEHDKFLEAL KLYGRSWRQI QEHIGTKTAV QIRSHAQKFF SKVVREPGSN NAIEIPPPRP  180
KRKPLHPYPR KCANSGTDAN PATGQSKLAP VSSSSGSDQE NGSPISVLSA MQSDAFGSSV  240
SNPSTRCTSP ASSDDGNNIP TFTSGEDNNV PCEPTVIDQS HKEIDRDRKD VNNMSEEDSS  300
EEEVQETSLK LFGRTVVIPD PRKRSSSDPK HESEEQISQP SNEEMLQASS SVGEIPAAYC  360
APNGWFMSYN SFPFQFGESA ADARIPPLHV WWPYYGFAPI SHPRGLSTVM QQTEGSDESD  420
GGKSHSAESS SDSGENVQMT SPQSSRIVES LGAIYVRESG SGFELKPSAN SAFVRVKPSN  480
SGDEEI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538785.1_FGP045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295230.0CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644385.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A0D3GL310.0A0A0D3GL31_9ORYZ; Uncharacterized protein
TrEMBLI1Q6W00.0I1Q6W0_ORYGL; Uncharacterized protein
STRINGORGLA06G0287300.10.0(Oryza glaberrima)
STRINGOBART06G28140.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-38MYB_related family protein