PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538755.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 573aa    MW: 63563.7 Da    PI: 8.8381
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538755.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.74e-351663081128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        lp+G++F+Ptd+el+ e+L++kv+++       ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+       
  KN538755.1_FGP008 166 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdv 255
                        799************.99******9996775553333333666646**********.555666799******************75666664 PP

                NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  KN538755.1_FGP008 256 qKGETRWHKTGKTRPVMV-SGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 308
                        433778************.9999**********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-38161327IPR003441NAC domain
PROSITE profilePS5100534.27166327IPR003441NAC domain
PfamPF023655.7E-16167308IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAHGRGTCAA CALSMTAAGA SHTVNGQLVR KRSVEVVCLN ATASINGIQQ KTGIDQESCM  60
SVQDLFTAPG VRRKRRRPRE ERVRDTEGEE DDAVPVQLYS QLATRKRPTH ACARPLPDAY  120
ESGMNRGHIS SSELIDAKLE ERRISTAKHC PSCGNKLDCK PDWVGLPAGV KFDPTDQELI  180
EHLEAKVREE GSRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT  240
TGTRKRRKIQ TECDVQKGET RWHKTGKTRP VMVSGRQKGC KKILVLYTNF GKHRKPEKTN  300
WVMHQYHLGD LEEEKEGELV VCKIFYQTQP RQCSWSSDRG AAAAAAVTTA AAAQQDQQRR  360
RDSGSGSCSS TRDHEVSATS YSTAGYAVAA AVEMQHLKHA ADHFSFAPFR KSFEEVGISG  420
DQVHSNQLGR SEQQHAGQEQ QPHRPLLATT TAVPATAFLI SRPTNPVSNI VPPAMQHASV  480
VLDHDQFHVP AILLHHDKFQ QQQQQQKLDR RSAGLEELIM GCTSSSTKGV CTCTFRKLQF  540
LTPKRQNGLT SHTGLLTTRI IMDSSNKAAF DMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-1216430813140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538755.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617160.0AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
GenBankAK1061520.0AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615055.20.0NAC domain-containing protein 75 isoform X3
SwissprotQ9M0F81e-147NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0D9Y4F20.0A0A0D9Y4F2_9ORYZ; Uncharacterized protein
STRINGOGLUM01G06390.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-116NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]