PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 638aa MW: 71379.3 Da PI: 6.609

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538753.1_FGP048	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.9	3.9e-35	3	77	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gCead+ e+k yhrrh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k KN538753.1_FGP048 3 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 77 ************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	29.521	1	77	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	8.3E-26	2	64	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-33	2	80	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.7E-27	3	77	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055070	Biological Process	copper ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MKCQVPGCEA DIRELKGYHR RHRVCLRCAH AAAVMLDGVQ KRYCQQCGKF HILLDFDEDK 60 RSCRRKLERH NKRRRRKPDS KGILEKDVDD QLDFSADGSG DGELREENID VTTSETLETV 120 LSNKVLDRET PVGSDDVLSS PTCAQPSLQI DQSKSLVTFA ASVEACLGTK QENTKLTNSP 180 VHDTKSTYSS SCPTGRVSFK LYDWNPAEFP RRLRHQIFEW LSSMPVELEG YIRPGCTILT 240 VFVAMPQHMW DKLSEDTGNL VKSLVNAPNS LLLGKGAFFI HVNNMIFQVL KDGATLTSTR 300 LEVQSPRIHY VHPSWFEAGK PIDLILCGSS LDQPKFRSLV SFDGLYLKHD CRRILSHETF 360 DYIGSGEHIL DSQHEIFRIN ITTSKLDTHG PAFVEVENMF GLSNFVPILV GSKHLCSELE 420 QIHDALCGSS DISSDPCELR GLRQTAMSGF LIDIGWLIRK PSIDEFQNLL SLANIQRWIC 480 MMKFLIQNDF INVLEIIVNS LDNIIGSELL SNLEKGRLEN HVTEFLGYRQ VDTRWAGDYA 540 PNQPKLGISV PLAESTGTSG EHDLHSTNEA SGEEENMPLV TKALPHRQCC HPEISARWLN 600 AASIGAFPGG AMRMRLATTV VIGAVSRGAC RASKEVLV

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MKCQVPGCEA DIRELKGYHR RHRVCLRCAH AAAVMLDGVQ KRYCQQCGKF HILLDFDEDK  60
RSCRRKLERH NKRRRRKPDS KGILEKDVDD QLDFSADGSG DGELREENID VTTSETLETV  120
LSNKVLDRET PVGSDDVLSS PTCAQPSLQI DQSKSLVTFA ASVEACLGTK QENTKLTNSP  180
VHDTKSTYSS SCPTGRVSFK LYDWNPAEFP RRLRHQIFEW LSSMPVELEG YIRPGCTILT  240
VFVAMPQHMW DKLSEDTGNL VKSLVNAPNS LLLGKGAFFI HVNNMIFQVL KDGATLTSTR  300
LEVQSPRIHY VHPSWFEAGK PIDLILCGSS LDQPKFRSLV SFDGLYLKHD CRRILSHETF  360
DYIGSGEHIL DSQHEIFRIN ITTSKLDTHG PAFVEVENMF GLSNFVPILV GSKHLCSELE  420
QIHDALCGSS DISSDPCELR GLRQTAMSGF LIDIGWLIRK PSIDEFQNLL SLANIQRWIC  480
MMKFLIQNDF INVLEIIVNS LDNIIGSELL SNLEKGRLEN HVTEFLGYRQ VDTRWAGDYA  540
PNQPKLGISV PLAESTGTSG EHDLHSTNEA SGEEENMPLV TKALPHRQCC HPEISARWLN  600
AASIGAFPGG AMRMRLATTV VIGAVSRGAC RASKEVLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	6e-41	2	82	5	85	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	77	KRSCRRKLERHNKRRRRKP
2	63	75	RRKLERHNKRRRR
3	70	77	NKRRRRKP
4	71	76	KRRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00604	PBM	Transfer from AT5G18830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538753.1_FGP048

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100057	0.0	AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640052.1	0.0	squamosa promoter-binding-like protein 9
Swissprot	Q6I576	0.0	SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBL	B9FPK1	0.0	B9FPK1_ORYSJ; Uncharacterized protein
STRING	OGLUM05G17090.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6922	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-137	squamosa promoter binding protein-like 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]