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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN538747.1_FGP010 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 200aa MW: 21553.8 Da PI: 9.6027 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN538747.1_FGP010 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 148 | 197 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
KN538747.1_FGP010 148 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 197
79***********************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MAVGEVLTER RREHALLLLF AKINFQSTLQ PSVILSTFGW ISIPVKASTT SVTAGGKRAS 60 AQNTETLTTD LVLIPICRQE PKISSIVPEK ESLFSDLINS CKLPTDLSCG PSSMTELTAA 120 AAPAGSGSSA AVAAGSSEKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA 180 EVALIVFSSR GRLYEYANNR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-21 | 140 | 197 | 1 | 58 | Myocyte-specific enhancer factor 2B |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003105 | 1e-158 | AP003105.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0489A05. |
GenBank | AP003197 | 1e-158 | AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06. |
GenBank | AP014957 | 1e-158 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 1e-158 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |