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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538740.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 121aa MW: 13192.9 Da PI: 8.8629 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.8e-08 | 7 | 26 | 38 | 57 |
TS-HHHHHHHHHHHHHHHHC CS Homeobox 38 gLterqVkvWFqNrRakekk 57 +++ ++V++WFqN++a+e++ KN538740.1_FGP013 7 RIEGKNVFYWFQNHKARERQ 26 5899**************97 PP | |||||||
2 | Wus_type_Homeobox | 53 | 8.2e-18 | 1 | 28 | 38 | 65 |
Wus_type_Homeobox 38 eLeeyGkiedkNVfyWFQNrkaRerqkq 65 +L++yG+ie+kNVfyWFQN+kaRerqk+ KN538740.1_FGP013 1 MLRQYGRIEGKNVFYWFQNHKARERQKK 28 59************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 8.9E-6 | 7 | 26 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MLRQYGRIEG KNVFYWFQNH KARERQKKRL TTLDVTTTTA AAAADADASH LAVLSLSPTA 60 AGAAAPSFPG FYVGNGGAVQ TDHTNWDCTA MATEKTFLQG PYDRAVLPSC HDANCLMRRT 120 V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538740.1_FGP013 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB218894 | 1e-129 | AB218894.1 Oryza sativa Japonica Group mRNA for OsWUS protein, complete cds. | |||
GenBank | AM234746 | 1e-129 | AM234746.1 Oryza sativa mRNA for WUS protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653851.1 | 2e-45 | PREDICTED: WUSCHEL-related homeobox 1B-like | ||||
Swissprot | Q7XM13 | 3e-45 | WOX1_ORYSJ; WUSCHEL-related homeobox 1 | ||||
TrEMBL | S5CT48 | 2e-66 | S5CT48_ORYLO; WUS (Fragment) | ||||
STRING | OPUNC04G26040.1 | 2e-48 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12465 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 2e-13 | WOX family protein |
Publications ? help Back to Top | |||
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