PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538731.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 732aa    MW: 80729.6 Da    PI: 4.6368
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538731.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54e-25186239155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        ++r++WtpeLH+ Fv av++L G ++A+P++il++mkv+ +t+e+++SHLQkYRl
  KN538731.1_FGP014 186 RQRVVWTPELHRDFVIAVHEL-GVDRAVPRKILRMMKVDYMTRENIASHLQKYRL 239
                        58*******************.********************************8 PP
2Response_reg63.31.3e-21181261109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ ++ll+ +l++ +y + + ++d+  al++l+e+   +Dl++ D+ m +mdG++ll+ i  e  +lp+i+ +a+ge e++ + +
  KN538731.1_FGP014  18 VLAVDDSPVCLMLLEALLRRCKY-QPTMTRDAATALRMLRERPgdFDLVISDVHMLDMDGFKLLELIGLEM-DLPVIMQSANGELETMMKGV 107
                        799********************.9999***********988888**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l+Kp++ +++ +
  KN538731.1_FGP014 108 THGACDYLVKPVSLKDIQN 126
                        *************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.27E-3214137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-3615159No hitNo description
SMARTSM004481.1E-2416128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.04817132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-1918126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.64E-2219131No hitNo description
SuperFamilySSF466894.12E-18183243IPR009057Homeodomain-like
PROSITE profilePS5129410.269183242IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-26185244IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-23187239IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MAATQATAAR KFPEGLRVLA VDDSPVCLML LEALLRRCKY QPTMTRDAAT ALRMLRERPG  60
DFDLVISDVH MLDMDGFKLL ELIGLEMDLP VIMQSANGEL ETMMKGVTHG ACDYLVKPVS  120
LKDIQNIWQH VWRKRKLDIR NHNGGYNDGG ELVFATRTKR KYTRKMRNDG DNYGENKENM  180
DSTLKRQRVV WTPELHRDFV IAVHELGVDR AVPRKILRMM KVDYMTRENI ASHLQKYRLY  240
LKRISTQTGM DPDQFPEKWK YMNELDALKN YCENGRYHLT PAIASSSSSN PFARMNSASA  300
LAANGFLPTH SVQLKNSQRN MAMGTVGHGG NPGNNPVFQP LQNSSNARKC FPSGPSGSSF  360
ANISNGLVLD TDDSGSSYAD MFCKSMWDTS NGSPSCHSSN SSANKSNNGV SAPANQFQVQ  420
SNCGFSAPAN QFPVQSNCGF SAPANQYQVQ SNGWFSAPEK QYQVQSNGGF SVPANQFPVQ  480
SNGEFLAPTN QFPVQYPEVN NQPLVQMNQS STNHFSTIGN GYQFPDLANY SKYWQTTAPS  540
MFPDLGHNDG TSFGPSQANI ANINQISSFA ASSGQEPMFG DELHGQMSPI MSTISLSDFD  600
DQMGSFNIGN DTSPAEMMHD NFSLGSDSNI SSTTPTDSSF GSTFPDFHLD NPEMPAQMLN  660
GGDEDGILLP VLDDTVDQQD LFDQLDENNG FITGTNGPEG TDTLDDIVAE LFNDDFMEGY  720
DAVVDGDQDF VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-20185245464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538731.1_FGP014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035170.0AP003517.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02.
GenBankAP0040080.0AP004008.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1226_A12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882103.10.0two-component response regulator ORR25
SwissprotQ67W500.0ORR25_ORYSJ; Two-component response regulator ORR25
TrEMBLA0A0E0E4E00.0A0A0E0E4E0_9ORYZ; Uncharacterized protein
STRINGOMERI06G21100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-79response regulator 12