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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538730.1_FGP023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1106aa MW: 123698 Da PI: 7.295 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.5 | 4.1e-56 | 8 | 125 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een+ KN538730.1_FGP023 8 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENE 99 45559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Lee++ +ivlvhyle+k KN538730.1_FGP023 100 NFQRRTYWMLEEDFMHIVLVHYLETK 125 ***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.93 | 4 | 130 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-77 | 7 | 125 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.4E-50 | 10 | 123 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.8E-6 | 439 | 525 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00934 | 439 | 527 | No hit | No description |
Pfam | PF01833 | 1.3E-8 | 440 | 518 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.87E-18 | 440 | 526 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 3.58E-15 | 632 | 735 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 7.4E-16 | 635 | 737 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.17E-11 | 635 | 733 | No hit | No description |
PROSITE profile | PS50297 | 15.433 | 641 | 735 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 674 | 706 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 6.37E-8 | 834 | 887 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 836 | 858 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 837 | 866 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.025 | 838 | 857 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 859 | 881 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 861 | 884 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.2E-4 | 862 | 881 | IPR000048 | IQ motif, EF-hand binding site |
Gene3D | G3DSA:3.40.50.1820 | 5.8E-16 | 939 | 1072 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF53474 | 1.47E-15 | 996 | 1072 | IPR029058 | Alpha/Beta hydrolase fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1106 aa Download sequence Send to blast |
MTHIAQILKE AQQRWLRPAE ICEILKNYKS FRIAPEPPNR PQSGSLFLFD RKVLRYFRKD 60 GHNWRKKKDG KTVKEAHERL KSGSIDVLHC YYAHGEENEN FQRRTYWMLE EDFMHIVLVH 120 YLETKGGKSR TRGNNDMHQA AVMDSPLSQL PSQTIDGESS LSGQFSEYEE AESGGTGYHS 180 FTQMQQQQNG IGPVTDASMF SSRVSASSIG NYQGQHAMGH TTNFYSSSQH DSPLVLSDPN 240 LELANNGHES LWNGVMKPDE GTVQMTHLQP PVHPEQGMFT TEGQGVEYLT FDEVYSDGLS 300 LKDIGAAGAD VEPFWQFSSN SYLTEAIAFQ LSSATADISA TENSVQQNDG SLGAAIGFPF 360 LKTQSSNLSD ILKDSFKKSD SFTRWMSKEL LDVEDSQIQS SSGAYWNTEE ADSIIEASSR 420 EPLDQFTVAP MVLQDQLFSI VDFSPSWTYA GSKTKVLVTG RFLHANEVTE RCKWSCMFGE 480 VEIPAEISAD GTLRCYSPPH KPGRVPFYVT CSNRLACSEV REFEFRPSDS QYMDAPSPLG 540 ATNKFYFQIR LDNLLSLGPD VYQATITNPS KEMIDLSKKI SSLLANNDEW SKLLKLADDN 600 EPLSHDQQDQ YAENLIKEKL HDWLLYKVGD GGKGPSVLDD EGLGVLHLAA ALGYDWAIRP 660 TVTAGVNINF RDFHGWTALH WAAFCGRERT VVALIALGAA PGALTDPHPN YPAESTPADL 720 ASANGHKGIS GFLAESSLTS HLQALNLKEA NMSEISGLPG IGDITERNAS QPAIGDSLGA 780 VRNAAQAAAR IYQVFRVQSF QRKQAVQYEG DKGGISDEHA LSLLSMKPSK SGQLDPLHAA 840 ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV EKVILRWRRR 900 RAGLRGFRPT EGAIESSSGG TSSNLVKDKP AGDDYDFLQE GRKQTEERLQ KALARVKSMV 960 QYPEARDQYQ RILNVVSKMQ ESQVMCTENV KEKTELLHAL INGKKLSDLP KINQQTLIIW 1020 GEQDRVFPLE LGLRLKRHLG DTSELVIVKN AGHAINREKP AELCRLIKNY IADPSVKYRD 1080 GHKGSWKSAI KRFAGSSLRK CIYRMQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538730.1_FGP023 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614397.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X2 | ||||
TrEMBL | A0A0E0QYD9 | 0.0 | A0A0E0QYD9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G08490.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |