|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
KN538727.1_FGP013 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
bHLH |
Protein Properties |
Length: 189aa MW: 20607.5 Da PI: 7.0927 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN538727.1_FGP013 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 26.4 | 1.3e-08 | 109 | 149 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
KN538727.1_FGP013 109 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 149
699*****************87.....8****************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPLDFAMSS PGSDSGAPQG 60 SSSSSSSEAM REMIFHIAAL QPVEIDPEAV RPPKRRNVRI SKDPQSVAAR LRRERISERI 120 RILQRLVPGG TKMDTASMLD EAIHYVKFLK SQVQSLERAA AATGAAAHRA AAFGAAYPAA 180 LPMQHHAPW
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 90 | 95 | RPPKRR |
2 | 109 | 114 | RLRRER |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK060477 | 0.0 | AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence. |
GenBank | AK070458 | 0.0 | AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence. |
GenBank | AP005655 | 0.0 | AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07. |
GenBank | AP006057 | 0.0 | AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04. |
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |