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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538725.1_FGP066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 204aa MW: 22364.2 Da PI: 9.9217 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 9 | 53 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+ KN538725.1_FGP066 9 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 53 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.872 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-16 | 3 | 59 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-17 | 5 | 56 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.8E-10 | 6 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 6 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-10 | 9 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-9 | 9 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MRERKKGVPW SEQEHRLFLA GLEKLGKGDW RGISRSFVTT RTPTQVASHA QKFFLRHNSA 60 AKKTNNKRRS SLFDMVQDCD SGGRSLASSD PATRCNNNIS ASLSLQVSHH KSGDSAWPSS 120 ETPSVSEAQQ AMYIVSLISE SFCLRYDSYP STDRANSTSD KNVVAVSMTI GKQSVVPEAL 180 YGAQALQSLI CAKKVSKCSV LNLC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538725.1_FGP066 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059813 | 0.0 | AK059813.1 Oryza sativa Japonica Group cDNA clone:006-205-B05, full insert sequence. | |||
GenBank | AK068595 | 0.0 | AK068595.1 Oryza sativa Japonica Group cDNA clone:J013154K05, full insert sequence. | |||
GenBank | HQ858811 | 0.0 | HQ858811.1 Oryza sativa Japonica Group isolate UT1191 MYB-related transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638259.1 | 1e-91 | transcription factor MYBS3-like | ||||
TrEMBL | A0A0E0A3J4 | 1e-148 | A0A0E0A3J4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | Q6L564 | 1e-148 | Q6L564_ORYSJ; Putative MYB transcription factor | ||||
STRING | OGLUM05G29240.1 | 1e-148 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4932 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 4e-37 | MYB_related family protein |