PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538724.1_FGP041
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 431aa    MW: 46759.3 Da    PI: 7.3672
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538724.1_FGP041genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.3e-3993153262
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                        ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  KN538724.1_FGP041  93 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSVS 153
                        7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3289150IPR003851Zinc finger, Dof-type
PfamPF027013.5E-3295151IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.76197151IPR003851Zinc finger, Dof-type
PROSITE patternPS01361099135IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGECKYRFEG LENSSDVLCC DLVMWRSESA DLQHSGSSTT EPKTQENTVQ DSTSPPPQPE  60
VVDTEDSSAD KNSSENQQQQ GDTANQKEKL KKPDKILPCP RCSSMDTKFC YYNNYNINQP  120
RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SVSAASHFLQ RVRAALPGDP PLYAPVKTNG  180
TVLSFGSDLS TLDLTEQMKH LKDKFTPTTG IKNTDEMPVG LCAEGLSKTE ESNQMNPKEK  240
VSADRSPNVA QHPCMNGGAM WPFGVAPPPA YYTSSIAIPF YPAAAAAAAA YWGCMVPGAW  300
NAPWPPQSQS QSVSSSSAAS PVSTMTNCFR LGKHPRDGDE ELDSKGNGKV WVPKTVRIDD  360
VDEVARSSIW SLIGIKGDKV GADHGRGCKL AKVFESKDEA KTSTHTAISS LPFMQGNPAA  420
LTRSVTFQEG S
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538724.1_FGP041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735560.0AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.
GenBankAC1444910.0AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence.
GenBankAK0609000.0AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBankAK0669120.0AK066912.1 Oryza sativa Japonica Group cDNA clone:J013089G12, full insert sequence.
GenBankAK1045230.0AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2244290.0AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631794.10.0cyclic dof factor 1
TrEMBLA0A0E0CVT50.0A0A0E0CVT5_9ORYZ; Uncharacterized protein
STRINGOMERI03G04920.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-65cycling DOF factor 2