PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538723.1_FGP065
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 271aa    MW: 29982.1 Da    PI: 9.5858
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538723.1_FGP065genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33.1e-32176231156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  KN538723.1_FGP065 176 KSRRCWSPELHRQFVAALQQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 231
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.681173233IPR017930Myb domain
SuperFamilySSF466893.85E-17174234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28174234IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26176231IPR006447Myb domain, plants
PfamPF002494.0E-7178229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGLDLSLDLK MFAARSAVRM AAAAAKEATG VEACIRSLEE ERRKIEMFRR ELPLCARLLA  60
DVIELMKEEA GKRRKDGDDA EAKAEDGDKT KWMSTAQLWV DSRGSDADSE NDRRSGSTSP  120
ASRLLGGAEE SSSRAVAPPP YFRREERVVL RPAMPLLPPA AHSLQAQAQQ QQQARKSRRC  180
WSPELHRQFV AALQQLGGPQ VATPKQIREV MKVDGLTNDE VKSHLQKYRL HNRKSPGTAS  240
ASHSIVLVGD HWASQEVKLK LLQLGHCNAC G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13176229154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13176229154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13176229154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13176229154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538723.1_FGP065
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056250.0AK105625.1 Oryza sativa Japonica Group cDNA clone:001-200-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631206.11e-175transcription factor HHO5
TrEMBLA0A0E0GU711e-174A0A0E0GU71_ORYNI; Uncharacterized protein
STRINGONIVA03G36730.11e-175(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-37G2-like family protein