PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538723.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 269aa    MW: 28227.7 Da    PI: 8.1676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538723.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-0597119123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC+ CgksFs+   L  H  +H
  KN538723.1_FGP006  97 FKCSVCGKSFSSYQALGGHKTSH 119
                        89**********99998888777 PP
2zf-C2H2130.0003166188123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C k F++   L  H r+H
  KN538723.1_FGP006 166 HRCSICQKEFPTGQALGGHKRKH 188
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-997119No hitNo description
Gene3DG3DSA:3.30.160.602.3E-497119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0397124IPR007087Zinc finger, C2H2
PfamPF139121.2E-1297120IPR007087Zinc finger, C2H2
SMARTSM003550.004697119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-9161188No hitNo description
PfamPF139125.1E-12165190IPR007087Zinc finger, C2H2
SMARTSM003550.028166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078166188IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSSASSMEAL HAAVLKEEQQ QHEVEEATVV TSSSATSGEE GGHLPQGWAK RKRSRRQRSE  60
EENLALCLLM LARGGHHRVQ APPPLSASAP PPAGAEFKCS VCGKSFSSYQ ALGGHKTSHR  120
VKLPTPPAAP VLAPAPVAAL LPSAEDREPA TSSTAASSDG ATNRVHRCSI CQKEFPTGQA  180
LGGHKRKHYD GGVGAGAGAS STELLATVAA ESEVGSSGNG HSATRAFDLN LPAVPEFVWR  240
PCSKGKKMWD DEEEVQSPLA FKKPRLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538723.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907130.0AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.10.0zinc finger protein 1
SwissprotQ424301e-118ZFP1_WHEAT; Zinc finger protein 1
TrEMBLI1PFS50.0I1PFS5_ORYGL; Uncharacterized protein
STRINGORGLA03G0322100.10.0(Oryza glaberrima)
STRINGORGLA10G0168200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-29salt tolerance zinc finger