PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538721.1_FGP052

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 426aa MW: 45927.4 Da PI: 6.5922

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538721.1_FGP052	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.4e-08	348	376	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r++W++ ++ l+++v+++G+g+Wk I KN538721.1_FGP052 348 RKKWSEKQEKTLLEGVEKYGKGNWKDIKM 376 789***********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.051	343	410	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-8	344	380	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.72E-8	346	387	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-6	348	378	IPR001005	SANT/Myb domain
CDD	cd11660	4.18E-12	349	388	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSVSES 60 SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS 120 SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLAEKYSTSL YQFYSPLAVS AVGESTALEI 180 LDTLQRPDAS TNHPGTLPQV DNAPETNGAS HCAQQNDGAK SGLVKQNAEA DRPQQDSTRH 240 QQDSVQGASN SQLKESSVTM ESIRGTGPDI TGFMEEATPR VAGQFAPDNI KNHQVTGSKR 300 SLMEKNPTAS TYEWDGSDSE GKRPAAKRRL PIFERTAKPS PTAAHKTRKK WSEKQEKTLL 360 EGVEKYGKGN WKDIKMAYPD VFEDRSTDRG AMSVGTSCSE RLFSYLNVSV LLFVLATISS 420 GAASCE

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSVSES  60
SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS  120
SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLAEKYSTSL YQFYSPLAVS AVGESTALEI  180
LDTLQRPDAS TNHPGTLPQV DNAPETNGAS HCAQQNDGAK SGLVKQNAEA DRPQQDSTRH  240
QQDSVQGASN SQLKESSVTM ESIRGTGPDI TGFMEEATPR VAGQFAPDNI KNHQVTGSKR  300
SLMEKNPTAS TYEWDGSDSE GKRPAAKRRL PIFERTAKPS PTAAHKTRKK WSEKQEKTLL  360
EGVEKYGKGN WKDIKMAYPD VFEDRSTDRG AMSVGTSCSE RLFSYLNVSV LLFVLATISS  420
GAASCE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538721.1_FGP052

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071940	0.0	AK071940.1 Oryza sativa Japonica Group cDNA clone:J013077N22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646481.1	0.0	uncharacterized protein LOC4344404
TrEMBL	A0A0E0APQ5	0.0	A0A0E0APQ5_9ORYZ; Uncharacterized protein
STRING	OGLUM07G27460.3	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13998	22	24