PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538714.1_FGP046
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 405aa    MW: 45245.5 Da    PI: 10.1312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538714.1_FGP046genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.1e-131453146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       rg WT+eEd +l+ +++q     W+ Ia+ ++ gRt++++k++w++
  KN538714.1_FGP046 14 RGQWTPEEDNKLLSYITQ-----WSVIAAQLP-GRTDNDVKNHWNT 53
                       89**************96.....99*******.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.08E-15262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-19959IPR009057Homeodomain-like
PROSITE profilePS5129420.523959IPR017930Myb domain
SMARTSM007178.5E-101357IPR001005SANT/Myb domain
PfamPF002499.2E-111453IPR001005SANT/Myb domain
CDDcd001671.17E-101755No hitNo description
Gene3DG3DSA:2.30.30.1001.6E-29240317No hitNo description
CDDcd017241.08E-61240329No hitNo description
SuperFamilySSF501824.78E-22240350IPR010920LSM domain
PfamPF014236.6E-18241305IPR001163LSM domain, eukaryotic/archaea-type
SMARTSM006514.2E-17241306IPR001163LSM domain, eukaryotic/archaea-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGRVPCCEKD NVKRGQWTPE EDNKLLSYIT QWSVIAAQLP GRTDNDVKNH WNTKLKKKLS  60
GMGIDPVTHK SFSHLMAEIA TTLAPPQVAH LAEAALGCFK DEMLHLLTKK RPSDFPSPAL  120
SISTGRVRVG AKVSTKCANG TTQVDELNFR SNQTEELVEA DEDTSTQKRS AKIHDFCFGI  180
PFGLATLFLG TLSLKFWRSG KSSFIFILGQ AAISAVLAWK YSHAYILTNR ILPWAFYASL  240
RFLMKLNNET VTIELKNGTV VHGTIIGVDI SMNTHLKTVK LTLKGKNPVT LDHLSVRGNN  300
IRYYILPDSL NLETLLVEDT PRVKAKKPTA GRAAWAVRRE RGAAVQWRGM CKLKFNRERV  360
GCYLLVILVV ALLIGVLFGL GVFRHGYERF KDLGRNHTCY DCNTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ah0_g6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ah0_j6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ah0_V6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ahd_b6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ahd_j6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ahd_V6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ff7_g6e-38240330494Small nuclear ribonucleoprotein Sm D1
6ff7_n6e-38240330494Small nuclear ribonucleoprotein Sm D1
6icz_c6e-38240330494Small nuclear ribonucleoprotein Sm D1
6icz_j6e-38240330494Small nuclear ribonucleoprotein Sm D1
6id0_c6e-38240330494Small nuclear ribonucleoprotein Sm D1
6id0_j6e-38240330494Small nuclear ribonucleoprotein Sm D1
6id1_c6e-38240330494Small nuclear ribonucleoprotein Sm D1
6id1_j6e-38240330494Small nuclear ribonucleoprotein Sm D1
6qw6_416e-38240330494Small nuclear ribonucleoprotein Sm D1
6qw6_516e-38240330494Small nuclear ribonucleoprotein Sm D1
6qx9_116e-38240330494Small nuclear ribonucleoprotein Sm D1
6qx9_216e-38240330494Small nuclear ribonucleoprotein Sm D1
6qx9_416e-38240330494Small nuclear ribonucleoprotein Sm D1
6qx9_516e-38240330494Small nuclear ribonucleoprotein Sm D1
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538714.1_FGP046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064411e-143AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149601e-143AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-143CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551661e-143CR855166.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0124N08, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-48myb domain protein 103