PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538709.1_FGP094
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 164aa    MW: 18039.2 Da    PI: 7.6704
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538709.1_FGP094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.85.1e-1057971154
                       HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                        l++  +     ryp+ +++  LAk++gLt +qV++WF N R +
  KN538709.1_FGP094 57 ALRTISRQ---FRYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 97
                       44444444...48*****************************98 PP
2BELL101.46.9e-33570166
               BELL  1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkd 66
                       erqe+q+kk+kLl++l+eV++rY+qy+ q+q+v+++Fea+ag gsa+ YtslAl++iSr+Fr  kd
  KN538709.1_FGP094  5 ERQEMQMKKSKLLNMLDEVEQRYRQYHRQMQAVAAAFEAAAGAGSATTYTSLALRTISRQFRYPKD 70
                       79************************************************************7666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075267.5E-30170IPR006563POX domain
SMARTSM005744.4E-8178IPR006563POX domain
SMARTSM003892.7E-646105IPR001356Homeobox domain
CDDcd000867.18E-951102No hitNo description
SuperFamilySSF466897.27E-1451108IPR009057Homeodomain-like
PROSITE profilePS5007110.73858101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1864107IPR009057Homeodomain-like
PfamPF059203.3E-136797IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSTAERQEMQ MKKSKLLNML DEVEQRYRQY HRQMQAVAAA FEAAAGAGSA TTYTSLALRT  60
ISRQFRYPKD SDKVMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYAEE TKAKEEEEEE  120
HDAAAAAAGD RGGVAEQAPS KPDDSAGIGM SSSSPAAAAS RNKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538709.1_FGP094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1208441e-156AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664357.14e-63PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ562e-26BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLJ3NBK84e-65J3NBK8_ORYBR; Uncharacterized protein
STRINGOB12G13660.17e-66(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-20BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]